| Chapter 18 Genetics of Viruses & Bacteria | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Chapter 18 Genetics of Viruses & Bacteria | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Chapter 19 Eukaryotic Genomes | ||
| Objectives | ||
| The Structure of Eukaryotic Chromatin
1. Compare the structure and organization of prokaryotic and eukaryotic genomes. 2. Describe the current model for progressive levels of DNA packing in eukaryotes. 3. Explain how histones influence folding in eukaryotic DNA. 4. Distinguish between heterochromatin and euchromatin. The Control of Gene Expression 5. Explain the relationship between differentiation and differential gene expression. 6. Describe at what level gene expression is generally controlled. 7. Explain how DNA methylation and histone acetylation affect chromatin structure and the regulation of transcription. 8. Define epigenetic inheritance. 9. Describe the processing of pre-mRNA in eukaryotes. 10. Define control elements and explain how they influence transcription. 11. Distinguish between general and specific transcription factors. 12. Explain the role that promoters, enhancers, activators, and repressors may play in transcriptional control. 13. Explain how eukaryotic genes can be coordinately expressed and give some examples of coordinate gene expression in eukaryotes. 14. Describe the process and significance of alternative RNA splicing. 15. Describe factors that influence the life span of mRNA in the cytoplasm. Compare the longevity of mRNA in prokaryotes and in eukaryotes. 16. Explain how gene expression may be controlled at the translational and post-translational level. The Molecular Biology of Cancer 17. Distinguish between proto-oncogenes and oncogenes. Describe three genetic changes that can convert proto-oncogenes into oncogenes. 18. Explain how mutations in tumor-suppressor genes can contribute to cancer. 19. Explain how excessive cell division can result from mutations in the ras proto-oncogenes. 20. Explain why a mutation knocking out the p53 gene can lead to excessive cell growth and cancer. Describe three ways that p53 prevents a cell from passing on mutations caused by DNA damage. 21. Describe the set of genetic factors typically associated with the development of cancer. 22. Explain how viruses can cause cancer. Describe several examples. 23. Explain how inherited cancer alleles can lead to a predisposition to certain cancers. Genome Organization at the DNA Level 24. Describe the structure and functions of the portions of eukaryotic DNA that do not encode protein or RNA. 25. Distinguish between transposons and retrotransposons. 26. Describe the structure and location of Alu elements in primate genomes. 27. Describe the structure and possible function of simple sequence DNA. 28. Using the genes for rRNA as an example, explain how multigene families of identical genes can be advantageous for a cell. 29. Using a-globin and b-globin genes as examples, describe how multigene families of nonidentical genes may have evolved. 30. Define pseudogenes. Explain how such genes may have evolved. 31. Describe the hypothesis for the evolution of a-lactalbumin from an ancestral lysozyme gene. 32. Explain how exon shuffling could lead to the formation of new proteins with novel functions. 33. Describe how transposition of an Alu element may allow the formation of new genetic combinations while retaining gene function.
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| Caught Red-Handed | ![]() |
Introduction:
Bacteria are everywhere. They have evolved the ability to inhabit almost every surface on the planet; however, they are invisible to the naked eye due to their small size. Bacteria have been found living in the deepest part of the ocean, in volcanic vents, in boiling hot springs, and even deep in polar ice caps. Many species of bacteria live inside of other organisms in a harmless commensalistic way such as the intestinal bacteria, Escherichia coli. Bacteria can reproduce at very rapid rates whenever conditions are favorable, as often as every 20 minutes doubling in number. The bacterial population is kept in check by the natural defenses of the host, such as the immune system and proper washing habits. When these natural defenses fail, bacteria can quickly become a problem. Some bacteria produce poisons or toxins that can be life-threatening if the bacterial population isn’t controlled by our natural defenses.
The United States Centers for Disease Control (CDC) states that the best way to prevent bacterial spread and infection is through the use of proper sanitary techniques. Perhaps the most critical step in this prevention is the use of proper hand washing. When improperly washed, your hands are one of the most easily colonized areas of your body and many of our behaviors involve the use of our hands. Proper hand washing requires the use of water as hot as you can stand, soap, and lots of rubbing. The soap and water serve to destroy bacteria, and the rubbing helps slough off dead skin cells along with lots of bacteria.
Objective:
Students will examine:
Materials (Part A):
Black light, Glo-Germ powder, lotion or Glo-Germ oil, hand soap, water, paper towels, pencil, lab sheet
Procedure (Part A):
Data Table 1
| Time of Wash in Seconds | Percent of Hand Covered with “germs” |
| 0 (initial observation) | |
| 10 | |
| 30 | |
| 60 | |
| 120 |
Materials (Part B):
Tennis ball, “play” money, stuffed toy, pencil, lab sheet
Procedure (Part B):
Data Table 2
| Name of Item | Percent Coverage |
| Initial Hand Coverage | |
| Tennis Ball | |
| “Play” money | |
| Toy |
Questions:
Optional:
Create a graph based on the data from table 1.
Title _____________________________

KINGDOMS ARCHAEBACTERIA & EUBACTERIA

All Materials © Cmassengale
Bacterial Evolution & Classification

| STRUCTURE | FUNCTION |
| Cell Wall | protects the cell and gives shape |
| Outer Membrane | protects the cell against some antibiotics (only present in Gram negative cells) |
| Cell Membrane | regulates movement of materials into and out of the cell; contains enzymes important to cellular respiration |
| Cytoplasm | contains DNA, ribosomes, and organic compounds required to carry out life processes |
| Chromosome | carries genetic information inherited from past generations |
| Plasmid | contains some genes obtain through genetic recombination |
| Capsule, and slime layer | protects the cell and assist in attaching the cell to other surfaces |
| Endospore | protects the cell against harsh environmental conditions, such as heat or drought |
| Pilus (Pili) | assist the cell in attaching to other surfaces, which is important for genetic recombination |
| Flagellum | moves the cell |
Kingdom Archaebacteria

Methanogens
Extreme Halophiles
Thermoacidophiles (Thermophiles)
Kingdom Eubacteria (true bacteria)

Gram Staining


Gram-positive bacteria (Gram +)



Gram-negative bacteria (Gram -)

Phylum Cyanobacteria

OSCILLATORIA
Phylum Spirochetes
Phylum Gram Positive bacteria
Phylum Proteobacteria
Enteric bacteria

Chemoautotrophs
Nitrogen-Fixing bacteria

Methods of Nutrition
Methods of Respiration
Bacterial Reproduction & Genetic Recombination
Conjugation

Transformation
Transduction

Pathogenic bacteria
Bacteria
ppt Q’s
Prokaryote & Eukaryote Evolution
1. What does our current evidence tell us about the evolution of prokaryotes and eukaryotes?
2. About how long ago did eukaryotes evolve from prokaryotes?
3. Name the 2 theories of cellular evolution.
4. Explain the infolding theory.
5. What does endosymbiosis mean?
6. Explain the endosymbiotic theory of cell organelle formation.
7. Name 2 organelles thought to have arisen in this way.
Prokaryotic & Eukaryotic Cells
8. Label the parts of this prokaryotic cell.
9. Name several structures that are found in eukaryotic, but NOT prokaryotic cells.
10. What type of cells are the most numerous on Earth?
11. What are the most common type of prokaryotic cells?
12. How old are the earliest prokaryotic fossils?
Classification of Life
13. Name the 3 domains and the organisms found in each.
a.
b.
c.
14. ______________ are found in harsh environments.
15. Give 3 examples of harsh environments in which Archaebacteria can be found.
16. What group is referred to as the true bacteria?
17. What photosynthetic member is in this group?
Characteristics of Bacteria
18. What must be used to view prokaryotic cells?
19.What cell structures are lacking in prokaryotes?
20. Do bacteria have ribosomes like other types of cells?
21. Describe the genetic material of the bacteria. be sure to tell where it is found.
22. What surrounds the cytoplasm of bacterial cells?
23.What surrounds the outside of all bacterial cells?
24. Cell walls of true bacteria contain ____________________.
25. Some bacteria have a sticky ____________ around the cell wall to attach to __________ or other bacteria.
26. Besides the circular chromosome, where else can DNA be found inside a bacterial cell?
27. What is the size of most bacterial cells?
28. Compare the size of bacteria to the tip of a pin.
29. ____________ of the bacterial cell membrane are called _______________.
30. What two cellular processes can take place in mesosomes?
31. At what pH do bacteria do best?
32. Most bacteria act as ________________. Why is this so important?
33. How can some bacterial be harmful? Give an example.
34. name two other important uses for bacteria.
35. What does motile mean?
36. Motile bacteria may have one or more ______________ for movement.
37. Flagella attach to the bacteria by the ___________ ___________.
38. The basal body attaches to the cell through both the cell _________and the cell ___________.
39. What protein makes up bacterial flagella?
40. Tell how these types of bacteria differ from each other:
a. Monotrichous
b. Lophotrichous
c. Amphitrichous
d. Peritrichous
41. What type of bacteria is this?

42. What are bacterial pili?
43. How do pili compare to flagella in size?
44. Give three functions of pili.
a.
b.
c.
Bacterial Shapes
45. Name and describe 5 shapes used to classify bacteria.
a.
b.
c.
d.
e.
46. What does each of these prefixes tell you about the bacteria’s shape:
a. Diplo-
b. Strepto-
c. Staphylo-
47. Sketch the shape of these bacteria:
a. Coccus
b. Bacillus
c. Spirillium
d. Diplococcus
e. Streptococcus
f. Staphylococcus
g. Diplobacillus
48. E. coli is classified as what shape bacteria?
Bacterial Kingdoms
49. How do the cell walls of Archaebacteria differ from the true bacteria?
50. How do the cell membranes differ?
51. Are the ribosomes the same?
52. Are the gene sequences the same?
53. Do Archaebacteria require oxygen?
54. How is there environment different from true bacteria?
55. What are they commonly called?
56. How many groups make up the ancient bacteria and name them?
57. Methanogens live in _____________ environments. What is lacking in this environment?
58. How do methanogens get their energy?
59. Name 3 environments in which methanogens are found.
60. How do methanogens help cows?
61. How did the methanogens get their name?
62. The __________ ___________ live in very salty environments.
63. How do they get their energy?
64. Name two bodies of water in which halophiles are found.
65. ______________ live in extremely hot environments.
66. Thermophiles that also live in acidic conditions are called _____________________.
67. Name 3 habitats in which thermophiles are found.
Kingdom Eubacteria
68. Most true bacteria are ____________ and come in ________ basic shapes. Name the shapes.
69. Do eubacteria require oxygen?
70. How are they identified?
71. When was gram staining developed?
72. Describe Gram staining.
73. What colors do bacterial cell walls stain?
74. Describe the cell wall of Gram positive bacteria.
75. What color do they stain?
76. Can Gram positive bacteria be treated with antibiotics?
77.Name 5 Gram positive bacteria and tell how they’re used or what they may cause.
a.
b.
c.
d.
e.
78. Describe the cell walls of Gram negative bacteria.
79. Are antibiotics effective against Gram negative bacteria?
80. Some photosynthetic Gram negative bacteria make ___________ instead of oxygen.
81. How do some Gram negative bacteria help plants?
82. Where can Rhizobacteria be found and what is their job?
83. _____________ are parasitic bacteria carried by ticks that may cause ___________ disease or _____________ _______________ _____________ fever.
84. Cyanobacteria are Gram ____________ and carry on ______________ to make food.
85. What is the common name for cyanobacteria?
86. What two main pigments do cyanobacteria contain?
87. What colors are cyanobacteria?
88. _______________ is a cyanobacterium that grows in chains.
89. Name the specialized structures on cyanobacteria that help fix nitrogen.
90. How do cyanobacteria cause eutrophication?
91. Spirochetes are Gram __________ bacteria that move by ___________.
92. Describe the motion of spirochetes.
93. Do all spirochetes need oxygen?
94. Spirochetes may be _______________, _______________, or symbiotic.
95. What are enteric bacteria? Give an example.
96. _______________ is an enteric bacterium that causes food poisoning.
97. How do chemoautotrophic bacteria get their energy?
Nutrition, Respiration, and Reproduction
98. Name and describe 4 modes of nutrition in bacteria.
a.
b.
c.
d.
99. Explain each of the following methods of respiration in bacteria.
a. Obligate Aerobes-
b. Obligate Anaerobes-
c. Facultative Anaerobes-
100. Anaerobes carry on ______________ to release energy from food, while aerobes carry on ____________ _______________.
101. Bacteria reproduce asexually by what method?
102. Before the cell can divide, what must happen?
103. Is binary fission a slow or fast process?
104. How do the new cells compare with each other after binary fission? What are they called?
105. Bacteria can reproduce sexually by ________________.
106. Describe how conjugation occurs.
107. What is the function of pili in conjugation?
108. How do the new cells compare to each other after conjugation?
109. When can bacteria produce spores and why?
110. What are the spores called?
111. How long can an endospore survive?
112. Why are endospores such a problem in health care facilities and in the canning industry?
113. Bacteria can genetically change by _________________ and ____________________.
114. Disease-causing bacteria may become ______________ _____________ when they genetically change.
115. How do bacteria transform?
116. Describe transduction in bacteria and give an example of a product made by bacteria using this method.
Pathenogenic Bacteria
117. What are pathogens?
118. Pathogens may cause ____________.
119. What are toxins?
120. What is the difference between endotoxins and exotoxins?
121. Name a bacterium that produces each type of toxin.
a. Endotoxin?
b. Exotoxin?
