Fimbriae Article

Fimbriae, Fibrils, Sex and Fuzzy Coats

 

The Limitation of Light

One of the frustrating aspects of working with bacteria is that they are so small that it is almost impossible to see anything other than their shape when looking down even the very best of optical microscopes. Even then, their refractive index is so similar to that of water that they have to be stuck to a glass slide, killed and stained before even their shape is revealed. Microscopes which can make use of polarized light (Phase contrast microscopy) can be used to see living bacteria but apart from the added ability of seeing some species happily swimming around they add little to what we can see using conventional staining techniques.

The fact that some species could move quite rapidly intrigued many early microbiologists and eventually some special staining procedures lead to the discovery of thin whip-like appendages which they called flagellae and conferred motility.  This is not to say that light microscopy is not useful. It remains an essential tool in any bacteriology laboratory but it should be recognized that the information obtained, although extremely helpful in routine work, is limited.

Electron Microscopy Reveals More

The invention of the electron microscope revealed much more detail of bacteria. Compared to the fascinating structures uncovered in eukaryotic cells, bacteria, both inside and out, were pretty uninteresting.  It wasn’t until the early 1960s that some interesting surface features of some bacterial species were noticed. This delay was partly due to the electron microscopy techniques in use at that time. The convention at the time was to use ultra-thin sections of tissue, far thinner than sections used for light microscopy. It seemed normal then to prepare bacteria in the same way. Using these techniques, the outer surfaces of bacteria seemed fairly barren but the technique did reveal some of the double membrane-like composition of Gram-negative bacteria.

Shadow-Casting Reveals Still More

Although thin sections of bacteria did not allow flagella to be seen in their entirety it did reveal interesting cross-sections which showed their internal structure. It also enabled detail of flagella attachment to be demonstrated.  It was not until electron microscopes were used to look at whole cells rather than ultra-thin sections that more progress was made. This change required the development of new staining techniques known as shadow-casting where bacterial surfaces were sprayed with electron-dense material such as gold or carbon at an angle. This highlighted the fine surface structures in a way exactly analogous to light falling on a stone surface at an angle reveals more detail than light falling on it at right angles.

Shadows, Flagellae and Fimbriae

Once shadow-casting techniques had been developed the whip-like flagellae were the first to be examined in detail but one researcher in particular noticed the presence of previously undreamed of structures on the surface of some species.  The person who first described these structures which he found on strains of Escherichia coli and Salmonella was Professor James Duguid. He called them fimbriae.

What are Fimbriae?

Fimbriae are thin, hair-like, projections made of protein sub-units. A number of different types have been described (about 7 at the last count, labeled Types I-VII) which can be distinguished by their size (length and diameter) and the type of antigens they carry.  They are characteristic of some Gram-negative bacteria such as Escherichia coli and Salmonella spp and were first described back in the 1960s by JP Duguid who was the Professor of Microbiology at the University of Dundee . Later, it was discovered that these fimbriae would re-grow after they had been broken off e.g. by vigorous shaking and that this re-growth was from pre-formed protein sub-units which were stored inside the cells. Fimbriae originate in the cytoplasm of the cell and project through the cell membrane and the cell wall.

 

A Controversy
A short while after Duguid published his findings an American called Robert Brinton published much the same stuff and called them pili. What followed was a pretty acrimonious exchange of letters in the scientific press about what they should be called.

It was all pretty good fun but to this day our American cousins, and anybody who doesn’t know any better, call them pili whereas all right-thinking, clear-minded and fair microbiologists refer to them as fimbriae.

 

 

So What do Fimbriae Actually do?

Over the years we have learned quite a lot about fimbriae and right from the very early days it was thought that they were involved in helping the bacteria adhere to surfaces. There is now a substantial body of evidence in support of this much of it in relation to pathogenic strains of E coli.

Type I Fimbriae are Pathogenicity Factors

It’s clear these days that Type I fimbriae are involved in bacterial adhesion and the very best example are those carried by pathogenic strains of E.coli. These come in a variety of forms including plain old EnteroPathogenic E.coli (EPEC), EnteroToxigenic E.coli (ETEC), EnteroInvasive E.coli (EIEC) and VeroToxogenic E.coli (VTEC). These E.coli strains use Type I fimbriae to adhere to gut mucosal cells which is the first step in the pathogenic process. Without the fimbriae their capacity to cause disease is greatly diminished or abolished completely.

Type IV fimbriae are particularly interesting. These have also been referred to as “bundle forming pili” because of their ability to aggregate into bundles. These fimbriae are thought to be connected with the ability of EPEC strains to form microcolonies on tissue monolayers and mutants lacking this ability show reduced virulence. Type IV fimbriae have also been shown to be involved in the remarkable phenomenon of bacterial twitching motility which allows bacterial cells to crawl over a surface.

Type VII Fimbriae, Viruses and the Sex Bit

Type VII fimbriae are the conduit for DNA transfer between bacterial mating strains. As it happens they also provide a binding site for certain bacteriophages. The significance of this is a mystery but it does enable Type VII to be seen clearly because when some of the bacteriophage is added to a suspension of cells, the ‘phage coat the Type VII fimbriae.  In the electron microscope picture above right you can clearly see little particles stuck on two of the fimbriae which are much longer than the rest because size does matter, at least to E.coli. In a generous attempt to resolve the fimbriae/pili argument it was proposed that Type VII fimbriae were named the “sex pilus”.

 

 Sex Pili
The photograph above was taken using a transmission electron microscope. The Type I fimbriae are the thin projections sticking out from the surface of the cell. Some of the fimbriae have broken off indicating that they are quite brittle.

 

Surfaces of Streptococci

Back in the days before we knew much about fimbriae researchers looking at ultra-thin sections of the serious pathogen Streptococcus pyogenes noticed that the very outside of the cells had a fuzzy appearance. In a fit of imagination it was called “fuzzy coat”.  Later, when they learned about shadow-casting whole cells they applied this technique but it did not help to resolve any particular structures like fimbriae.

 

S. pyogenes Fuzzy Coat
Even today we have not resolved any definite structure to the S. pyogenes “fuzzy-coat”. We do know, however, that it consists partly of a substance called “M-protein” which is a major pathogenicity factor of this species.

 

Negative Staining Reveals Surface Fibrils on Some Streptococci

Towards the late 1970s a rather different technique which made use of a special type of stain called a “negative stain” revealed very thin, delicate, hair-like structures on some oral streptococci such as Streptococcus sanguis and Streptococcus salivarius. Take a look at the photograph on the right. This is an electron micrograph of the surface of a Streptococcus salivarius cell and although it may not be terribly clear on this reproduction, the original shots showed two types of these thin hair-like structures, long ones and short ones.  This negative-staining technique could not, by the way, reveal anything hair-like on the surface of Streptococcus pyogenes which had the fuzzy coat.

Fibrils are not Fimbriae

More research using lots of different strains of different species of oral streptococci showed these “hairs” came in all sorts of lengths and some cells carried more than one type. They were very thin and flexible. Although some fimbriae on E.coli can be very thin, “flexible” is not a term normally associated with fimbriae.  To begin with these hairs were called “fibrils” and there is a fair amount of evidence to suggest they are made of protein and some evidence which suggests that some are even made of glycoprotein although glycoproteins are generally considered pretty rare beasts in bacteria. As far as fibril synthesis goes, we don’t know much. Generally speaking they are difficult to remove, probably because they are so flexible, so it’s not possible to say whether they can re-grow like fimbriae.  The analogy was taken a stage further when a role in adhesion was postulated and, in fact, there is fairly good evidence to back this up, at least for the S.salivarius fibrils.

Unfortunately at this point the waters got a bit muddy when some people started referring to the long fibrils as “fimbriae” and the short ones as “fibrils”. Since they are kind of like fimbriae this wasn’t so surprising but what was surprising was that they were never referred to as pili!

 

Streptococcal Fibrils
Some Oral Streptococci Have Tufts of Fibrils
Some strains of oral streptococci were found to carry tufts of fibrils and looked rather like punk-rockers with Mohican hairstyles. Later these were grouped together into a new species and given the rather elegant name Streptococcus cristae.

 

 

Fibril Tufts and Co-aggregation

There is evidence that these may also be involved in adhesion, this time to rod-shaped bacteria to make the structures commonly found in mature dental plaque called “corn-cob-configuration”.  When bacteria of the same species stick to each other it’s known as “aggregation”. In this case the bacteria are from different species and it’s known as “CO-aggregation”.

 

“Corn Cobs” in Dental Plaque 

 

And finally

You may have guessed by now that I’m a bit skeptical about using the term “fimbriae” to describe the surface structures of these oral streptococci. I prefer to describe them all as fibrils but I’ll probably end up in the minority.  Sooner or later this is all going to be resolved but for the time being it’s probably best to keep the term “fimbriae” reserved for those brittle hair-like, proteinaceous surface projections of Gram-negative rods like Escherichia and Salmonella and call everything else “fibrils”.

Just remember pili are fimbriae and fibrils are different and you won’t go far wrong.

 

 

SUMMARY
1. Fimbriae are appendages which have been seen on the surfaces of a range of Gram-negative rods such as E.coli and various species of Salmonella
2. Fimbriae come in 7 different types (I-VII) distinguished by their length and width
3. Fimbriae are thought to be important in adhesion and have been shown to be pathogenicity factors in pathogenic strains of E.coli.
4. Type VII fimbriae allow DNA transfer between mating strains of certain species such as E.coli
5. Fibrils are found on streptococci
6. Fibrils are different from fimbriae, they are thinner and appear to be more flexible
7. Some fibrils have been shown to function in adhesion e.g. in corn-cob-formations found in dental plaque

 

 

http://www.ncl.ac.uk/dental/oralbiol/oralenv/tutorials/fimbriae.htm

 

 

Enzyme PowerPoint Worksheet

Enzymes
ppt Questions

Enzyme Structure & Function

1. Most enzymes are what type of macromolecule?

2. Most enzymes are ______________ or ______________ structures.

3. Enzymes act as ___________ in reactions.

4. Are enzymes permanently changed in the chemical reactions they are involved in?

5. Will an enzyme work on any substance? Explain.

 

6. Can enzymes be reused?

7. What ending is found on many enzymes?

8. Give 3 examples of enzymes with this ending.

 

9. How does an enzyme work?

 

10. What effect does an enzyme have on activation energy needed to start a reaction?

11. Hydrogen peroxide H2O2 is a common waste product of cells. Enzymes called catalases in cells break this down into harmless ________________.

12. What is meant by the term substrate?

 

13. What is meant by active site?

 

14. Sketch and label the enzyme-substrate complex.

 

 

15. What is meant by induced fit?

 

16. What induces an enzyme to change the shape of its active site?

17. List 4 factors that can affect enzyme activity.

 

18. What is the effect of high temperature on an enzyme (running fever)?

 

19. What temperature do most enzymes do best at?

20. Most enzymes like a pH near ______________.

21. To denature an enzyme means the enzyme becomes _______________ and can no longer work properly.

22. Name 3 inorganic substances (cofactors) that are often needed for enzymes to work properly.

 

23. Give an example of an enzyme & its needed inorganic substance.

 

24. Give one example of an enzyme inhibitor.

25. Explain how competitive inhibitors work.

 

 

26. If a competitive inhibitor blocks the active site, the ____________ can’t fit.

27. Explain noncompetitive inhibitors. 

 

 

28. Do noncompetitive inhibitors bind to the active site? Explain.

 

 

First Semester Review

 

First Semester Review      

 

What is the study of life called?
What are the smallest units that can carry on life functions called?
Living things are composed of ______________.
Give an example of a scientific observation.
What is a hypothesis?
What 3 things compose an atom?
Matter is made of ________________.
When atoms gain energy, what happens to electrons?
Do  cells contain a few or thousands of different kinds of enzymes?
__________________ reactions are important in organisms because they allow the passage of energy from one molecule to another.
What is a polar molecule?
Water molecules break up other polar substances. Give an example of such a polar molecule.
What happens to ionic compounds in water?
Which is not a carbohydrate —– glycogen, steroids, cellulose, or sugars?
Amino acids are the monomers for making ________________.
Is ice an example of an organic molecule?
The type & order of the amino acids determines the ___________ of a protein.
Very active cells need more of which organelle?
What organelle is the packaging & distribution center of the cell?
What membrane surrounds the nucleus?
What is the function of mitochondria. Sketch their shape.
Where is chlorophyll found in plants?
Diffusion takes place from ________________ concentration to ___________.
If a cell has a high water content, will it lose or gain water?
Ink dispersing in a beaker is an example of ________________.
Very large molecules enter cells by a process called ________________.
Endocytosis and exocytosis occur in ______________ directions across a cell membrane.
What is photosynthesis?
Where do the dark reactions of photosynthesis take place?
When chlorophyll absorbs light energy ATP is made and what other energy carrying molecule?
When chlorophyll absorbs light energy, what happens to its electrons?
_______________ molecules are responsible for the photosystems.
Electrons that have absorbed energy & moved to a higher energy level enter what chain?
When cells break down food molecules, energy is temporarily stored in what molecule?
When muscles do not get enough oxygen, what acid forms during exercise?
If you are growing bacteria in a culture and lactic acids starts to form, the bacteria are not getting enough of what gas?
The 2 stages of cellular respiration are _____________ & oxidative respiration.
Citric acid forms in which cycle during cellular respiration?
ATP molecules are formed inside what cellular organelle?
The first filial generation is the result of  a __________________ cross.
If a genetic trait appears in every generation is it dominant or recessive?
When Mendel crossed pea plants & looked at 2 different traits (flower color & plant height), did the inheritance of one trait influence the other?
If a heterozygous individual is crossed with a homozygous recessive individual, how many phenotypes will result?
What is the expected genotypic ratio from a homozygous dominant X heterozygous monohybrid cross?
List several reasons for genetic counseling.
If a genetic disorder is found equally in males & females, is it autosomal dominant or recessive?
If both parents carry the gene for cystic fibrous, what is the chance that their child will develop the disease?
If a trait is sex-linked, will it occur more often in males or females?
If a gene is located on the X-chromosome, it is said to be ________________.
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Evolution & Phylogeny AP Study Guide

 

 

Unit 6  Evolution & Phylogeny Study Guide
  • Be able to give an example of an idea that Charles Darwin borrowed from Thomas Malthus
  • Know some anatomical structures that would be homologous to the wing of a bat
  • Know what important information was unavailable to Darwin in the mid-nineteenth century when he formulated his theory of evolution
  • Know the name of Darwin’s 1859 publication
  • Be able to explain all parts of the Darwin-Wallace theory of natural selection
  • Be able to explain how phylogenetic relationships are determined for closely related species
  • Be able to differentiate between analogous & homolgous structures
  • Know the requirements for the maintenance of  Hardy-Weinberg equilibrium
  • Be able to use the Hardy-Weinberg equation to determine allele frequencies and genotypic frequencies
  • Be able to describe and give an example of a cline
  • Be able to explain the bottleneck effect
  • Know what process creates new alleles and serves to balance natural selection
  • Be able to explain & give an example of genetic drift
  • Know what is meant by the “gene pool”
  • Know the major divisions of geologic time
  • Be able to give several examples of fossil types
  • Be able to explain binomial nomenclature
  • Be able to list in order the major taxonomic categories
  • Know what individuals in a population would most often carry copies of harmful recessive alleles
  • Be able to explain & give an example of hybrid sterility
  • Be able to explain & give an example of ecological isolation of species
  • Know what polyploidy is & how it can cause rapid speciation
  • Know the effect of mitosis & meiosis on allelic frequencies in nature
  • Be able to explain the effect on alleles when new members move into a population
  • Know the difference in prezygotic & postzygotic barriers
  • Be able to name & and give examples of prezygotic and postzygotic barriers
  • Be able to explain & give examples of mechanical and behavioral isolation
  • Know the difference between sympatric isolation and allopatric isolation
  • Be able to explain why such a great diversity of life exists on the Hawaiian & Galapagos Islands
  • Be able to tell the difference between anagenesis & cladogenesis
  • Know what taxonomic level can exist as a discrete unit in nature
  • Know what taxonomic unit would show the most genetic variation
  • Be able to explain & give an example of adaptive radiation
  • Be able to determine the age of a fossil using the half-life of carbon-14
  • Know what major evolutionary episode occurred closely with the formation of Pangaea
  • Be able to explain phylogeny
  • Know the significance of the asteroid hypothesis
  • Be able to explain & give examples of divergent & convergent evolution

 

Fish & Amphibian Study Guide

Fish & Amphibian Study Guide

Ø    List several characteristics found in all vertebrates.

Ø    What is the function of the kidney in fish?

Ø    What type of fish has skin covered by overlapping scales?

Ø    What type of fish feeds parasitically on other fish?

Ø    What type of fish has small scales embedded in the skin?

Ø    What does the word “Agnatha” mean?

Ø    Name 2 fish that retain their notochord throughout their life cycle.

Ø    What does the word “Chondrichthyes” mean?

Ø    Give 2 examples of agnathans.

Ø    Which fin propels bony fish through the water?

Ø    The word “amphibian” means  ___________________.

Ø    Name the 2 major groups of bony fish.

Ø    What is the function of the swim bladder in bony fish?

Ø    What structure covers the gills of bony fish?

Ø    Describe several characteristics of lungfish.

Ø    What makes up the skeleton of fish in the group Osteichthyes?

Ø    What structure helps draw water into the mouth of bony fish?

Ø    Give 2 ways amphibians breathe.

Ø    In what order are amphibians without tails found?

Ø    Describe the feeding habits of adult frogs.

Ø    Describe metamorphosis in frogs.

Ø    Give several reasons why frogs & toads return to water to reproduce.

Ø    Which order of amphibians is legless?

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