Cell Death

Nobel Prize in Medicine 2002

Genetic Regulation of Organ Development and Programmed Cell Death

Sydney Brenner H. Robert Horvitz John E. Sulston
Sydney Brenner H. Robert Horvitz John E. Sulston

Introduction

Sydney Brenner, Robert Horvitz and John Sulston’s discoveries concerning the genetic regulation of organ development and programmed cell death have truly opened new avenues for biological and medical research. We have all begun our lives in a seemingly modest way – as the fertilized egg cell, a tenth of a millimeter in size. From this small cell, the adult human being develops, with its hundred thousand billion cells, through cell division, cell differentiation and by formation of the various organs. To only make new cells is however not sufficient, certain cells must also die at specific time points as a natural part of the growth process. Think for example about how we for a short period during fetal life have web between our fingers and toes, and how this is removed by cell death.

The importance of cell differentiation and organ development was understood by many, but progress was slow. This was largely an effect of our complexity, with the large number of cells and many cell types – the forest could not be seen because of all the trees. Could the task to find the genetic principles be made simpler? Were there a species simpler than humans, but still sufficiently complex to allow for general principles to be deduced?

Sydney Brenner in Cambridge, UK, took on the challenge, and his choice was the nematode Caenorhabditis elegans. This may at first seem odd, a spool-shaped approximately 1 millimeter long worm with 959 cells that eats bacteria, but Brenner realized in the early 1960s that it was, what we today would call, “loaded with features”. It was genetically amenable and it was transparent, so that every cell division and differentiation could be directly followed in the worm under the microscope. Brenner demonstrated in 1974 that mutations could be introduced into many genes and visualized as distinct changes in organ formation. Through his visionary work, Brenner created an important research tool. The nematode had made into the inner circle of research.

John Sulston came to Brenner’s laboratory in 1969. He took advantage of that cell divisions could be followed under the microscope and assembled the cell lineage in the worm, showing which cells are siblings, first and second cousins. He found that cell divisions occurred with a very high degree of precision, the cell lineage was identical between different individuals. He also realized that certain cells in the lineage always died at a certain time point. This meant that programmed cell death was not a stochastic process, but rather occurred with a very high degree of precision. During the course of this work Sulston identified the first gene important for the cell death process: nuc-1.

Robert Horvitz came to work with Brenner and Sulston in 1974. Horvitz started a systematic search for genes controlling programmed cell death. He identified the key genes for the cell death process proper. The discovery of these central death genes, ced-3, ced-4 and ced-9, changed the view on programmed cell death from something rather obscure to a process with a strict genetic program. Horvitz also showed that there are human homologues to the death genes in the worm and that those have corresponding functions – the cell death machinery had deep evolutionary roots.

This year’s Nobel Prize celebrates the Joy of Worms. Brenner’s almost prophetic visions from the early 1960s of the advantages of this model organism have been fulfilled. It has given us new insights into the development of organs and tissues and why specific cells are destined to die. This knowledge has proven valuable, for instance, in understanding how certain viruses and bacteria attack our cells, and how cells die in heart attack and stroke.

Cell lineage – from egg to adult

All cells in our body are descendents from the fertilized egg cell. Their relationship can be referred to as a cellular pedigree or cell lineage. Cells differentiate and specialize to form various tissues and organs, for example muscle, blood, heart and the nervous system. The human body consists of several hundreds of cell types, and the cooperation between specialized cells makes the body function as an integrated unit. To maintain the appropriate number of cells in the tissues, a fine-tuned balance between cell division and cell death is required. Cells have to differentiate in a correct manner and at the right time during development in order to generate the correct cell type.

It is of considerable biological and medical importance to understand how these complicated processes are controlled. In unicellular model organisms, e.g. bacteria and yeast, organ development and the interplay between different cells cannot be studied. Mammals, on the other hand, are too complex for these basic studies, as they are composed of an enormous number of cells. The nematode C. elegans, being multi-cellular, yet relatively simple, was therefore chosen as the most appropriate model system, which has then led to characterization of these processes also in humans.

Programmed cell death

Normal life requires cell division to generate new cells but also the presence of cell death, so that a balance is maintained in our organs. In an adult human being, more than a thousand billion cells are created every day. At the same time, an equal number of cells die through a controlled “suicide process”, referred to as programmed cell death.

Developmental biologists first described programmed cell death. They noted that cell death was necessary for embryonic development, for example when tadpoles undergo metamorphosis to become adult frogs. In the human foetus, the interdigital mesoderm initially formed between fingers and toes is removed by programmed cell death. The vast excess of neuronal cells present during the early stages of brain development is also eliminated by the same mechanism.

The seminal breakthrough in our understanding of programmed cell death was made by this year’s Nobel Laureates. They discovered that specific genes control the cellular death program in the nematode C. elegans. Detailed studies in this simple model organism demonstrated that 131 of totally 1090 cells die reproducibly during development, and that this natural cell death is controlled by a unique set of genes.

The model organism C. elegans

Sydney Brenner realized, in the early 1960s, that fundamental questions regarding cell differentiation and organ development were hard to tackle in higher animals. Therefore, a genetically amenable and multicellular model organism simpler than mammals, was required. The ideal solution proved to be the nematode Caenorhabditis elegans. This worm, approximately 1 mm long, has a short generation time and is transparent, which made it possible to follow cell division directly under the microscope.

Brenner provided the basis in a publication from 1974, in which he broke new ground by demonstrating that specific gene mutations could be induced in the genome of C. elegans by the chemical compound EMS (ethyl methane sulphonate). Different mutations could be linked to specific genes and to specific effects on organ development. This combination of genetic analysis and visualization of cell divisions observed under the microscope initiated the discoveries that are awarded by this year’s Nobel Prize.

Mapping the cell lineage

John Sulston extended Brenner’s work with C. elegans and developed techniques to study all cell divisions in the nematode, from the fertilized egg to the 959 cells in the adult organism. In a publication from 1976, Sulston described the cell lineage for a part of the developing nervous system. He showed that the cell lineage is invariant, i.e. every nematode underwent exactly the same program of cell division and differentiation.

As a result of these findings Sulston made the seminal discovery that specific cells in the cell lineage always die through programmed cell death and that this could be monitored in the living organism. He described the visible steps in the cellular death process and demonstrated the first mutations of genes participating in programmed cell death, including the nuc-1 gene. Sulston also showed that the protein encoded by the nuc-1 gene is required for degradation of the DNA of the dead cell.

Identification of “death genes”

Robert Horvitz continued Brenner’s and Sulston’s work on the genetics and cell lineage of C. elegans. In a series of elegant experiments that started during the 1970s, Horvitz used C. elegans to investigate whether there was a genetic program controlling cell death. In a pioneering publication from 1986, he identified the first two bona fide “death genes”, ced-3 and ced-4. He showed that functional ced-3 and ced-4 genes were a prerequisite for cell death to be executed.

Later, Horvitz showed that another gene, ced-9, protects against cell death by interacting with ced-4 and ced-3. He also identified a number of genes that direct how the dead cell is eliminated. Horvitz showed that the human genome contains a ced-3-like gene. We now know that most genes that are involved in controlling cell death in C. elegans, have counterparts in humans.

Of importance for many research disciplines

The development of C. elegans as a novel experimental model system, the characterization of its invariant cell lineage, and the possibility to link this to genetic analysis have proven valuable for many research disciplines. For example, this is true for developmental biology and for analysis of the functions of various signaling pathways in a multicellular organism. The characterization of genes controlling programmed cell death in C. elegans soon made it possible to identify related genes with similar functions in humans. It is now clear that one of the signaling pathways in humans leading to cell death is evolutionarily well conserved. In this pathway ced-3-, ced-4- and ced-9-like molecules participate. Understanding perturbations in this and other signaling pathways controlling cell death are of prime importance for medicine.

Disease and programmed cell death

Knowledge of programmed cell death has helped us to understand the mechanisms by which some viruses and bacteria invade our cells. We also know that in AIDS, neurodegenerative diseases, stroke and myocardial infarction, cells are lost as a result of excessive cell death. Other diseases, like autoimmune conditions and cancer, are characterized by a reduction in cell death, leading to the survival of cells normally destined to die.

Research on programmed cell death is intense, including in the field of cancer. Many treatment strategies are based on stimulation of the cellular “suicide program”. This is, for the future, a most interesting and challenging task to further explore in order to reach a more refined manner to induce cell death in cancer cells.

Using the nematode C. elegans this year’s Nobel Laureates have demonstrated how organ development and programmed cell death are genetically regulated. They have identified key genes regulating programmed cell death and demonstrated that corresponding genes exist also in higher animals, including man. The figure schematically illustrates the cell lineage (top left) and the programmed cell death (below) in C. elegans. The fertilized egg cell undergoes a series of cell divisions leading to cell differentiation and cell specialization, eventually producing the adult organism (top right). In C. elegans, all cell divisions and differentiations are invariant, i.e. identical from individual to individual, which made it possible to construct a cell lineage for all cell divisions. During development, 1090 cells are generated, but precisely 131 of these cells are eliminated by programmed cell death. This results in an adult nematode (the hermaphrodite), composed of 959 somatic cells.

Source: http://nobelprize.org/nobel_prizes/medicine/laureates/2002/press.html

 

Cell Drawings HRWch4

Cell Drawings

Holt, Rinehart, Winston    Modern Biology

Draw on separate sheets of unlined paper, label drawing & each part, color, and tell the function of EACH LABELED PART (FUNCTION MUST BE WRITTEN NEXT TO THE LABEL) for the following cell drawings:

Page 72    Figure 4.4         Cell Shapes

Page 74    Figure 4.6         Animal Cell

Page 75    Figure 4.7         Bacterial cell (Prokaryote)

Page 76    Figure 4.9         Cell Organization

Page 77    Figure 4.10       Phospholipid

Page 78    Figure 4.11        Cell Membrane

Page 79    Figure 4.12        Nucleus & Nucleolus

Page 80    Figure 4.13        Mitochondria

Page 80    Figure 4.14        Ribosome

Page 81    Figure 4.15        Endoplasmic Reticulum

Page 82    Figure 4.16        Golgi

Page 84    Figure 4.18        Cytoskeleton

Page 85    Figure 4.19        Microtubule

Page 87    Figure 4.21        Plant Cell

Page 89    Figure 4.23        Chloroplast

When all drawings are complete — drawn, colored, labeled, and all functions written — then make a cover sheet with your name and a title and staple this to the top of your drawings. Number the pages in the lower right hand corner.

NO FUNCTIONS; NO GRADE!

Build a Cell

Use of our material:
This activity was created by Kelly Riedell for students in Biology class at Brookings High School. We have worked very hard on activities, Powerpoints/games/worksheets, etc to make this a resource for our students. If you are using our materials, please give us credit for our efforts by listing us as a source with links to our site.
Any questions, comments, or corrections can be directed to us at

BUILD -A-CELL GAME
Students review by answering questions AND
by practicing what parts look like and their
location as they build their cell.

AHEAD OF TIME:
1. Make a copy of the question cards. and cut them apart
You will need a set of question cards for each group of 4
I make the sets different colors so the cards don’t get mixed up.

2. Print out the Build a cell game parts sheets.
Copy the blank cell page onto colored paper (1 for each student)
Copy off the cell parts pieces onto clear transparency sheets, cut out,  and place in
paper lunch bags. (1 lunch bag per game group with enough parts in it to make 4 cells.)
Using clear transparencies allows some cell parts to build on top of each other.
(Ex: nucleolus goes inside nucleus, ribosomes sit on top of Rough ER)

PLAY THE GAME:
Students play in groups of 3-4. Each group has a lunch bag with cell parts pieces and a deck of question cards. Each student has his/her own blank cell score sheet. Students play by taking turns answering questions.  If they answer correctly, they get to pick a cell part from the lunch bag and place it on their cell scorecard in the correct place. If they get  it wrong they don’t get a part and the next student gets a turn.

First student to get all 9 cell parts into their cell is the winner.

AP Unit 2 Cell Study Guide

Unit 2    Cells Study Guide

How do bacterial cells differ from animal cells?
Cells that make proteins would have a large number of ________?
What protein makes up the cytoskeleton & gives a cell its shape?
How do phospholipids in the cell membrane move?
If a body cell had 24 chromosomes, how many chromosomes would be in the gamete?
If chromosomes have the same genes in the same location & the same banding pattern, they are said to be ___?
What chemical in animal cell membranes maintains their fluid nature?
Facilitated diffusion & active transport both require what molecules in cell membranes?
Name the 3 stages of cell signaling.
How does a sexual life cycle increase genetic variation?
What organelle converts light energy into chemical energy?
What will happens to the chromosomes in a cell that passes the restriction checkpoint?
What type of scope is needed to study the internal structure of a cell?
Does the cytoskeleton limit cell size?
Describe the signal-transduction pathway in animals.
What type of cells do not reproduce more cells by mitosis & cytokinesis?
Is diffusion active or passive transport?
How can you determine if a cell is in an isotonic solution?
What organelle makes lipids?
What is the function of these cell structures — mitochondrion, chloroplast, ribosome, lysosome, cell wall, & chromosomes?
How does CO2 move into a cell?
Name the parts of the cytoskeleton.
What cell organelles have two membranes?
What is active transport?
How does potassium move into & out of a cell?
How does one rotting piece of fruit affect the ripening of others?
Name all structures in a cell responsible for movement.
In what organisms is cell signaling less important?
If a cell has 92 chromosomes at the start of mitosis, how many will be in the daughter cells?
Describe paracrine signaling.
When do tetrads from in a cell?
What is the function of tyrosine-kinase receptors?
At what point are chromatids attached to each other?
What is the function of glycolipids & glycoproteins in animal cell membranes?
How does telophase of mitosis differ in plant & animal cells?
When the signal molecule changes the protein receptor, what process begins?
What is membrane potential?
What effect would calcium deficiency have on a plant?
Besides the nucleus, where else can DNA be found in a cell?
Do plant cells have mitochondria? Why or why not?
Which proteins in the cell membrane function in active transport?
Why would bacterial cells not be capable of phagocytosis?
Why are eukaryotic cells larger than prokaryotic cells?
What is the purpose of cell fractionation?
Through what type of junctions do ions travel between cells?
How can you determine if a karyotype is from a male or female?
How do genetic differences in clones occur?
If the spindle can not form, at what stage will mitosis no longer proceed?
What will be true of cells that undergo mitosis but not cytokinesis?
What cellular structure helps form the cleavage furrow in animal cells?
How do receptor proteins in a membrane act like enzymes?
What occurs during prophase of mitosis?
By what process do large solids move into a cell?
Does the movement of oxygen & carbon dioxide across cell membranes require energy?
Describe the interior of chloroplasts & mitochondria.
How is synaptic signaling different than hormone signaling?
What is a karyotype?
How do daughter & parent cells compare with each other?
BACK

 

AP Study Guide Unit 3 Cell Energetics

 

 

Unit 3     Cellular Energetics

 

What form of energy is the most random?
What changes occur in H, S, and G when a protein forms from amino acids?
How does an enzyme catalyze a reaction?
Explain the 2nd law of thermodynamics.
Is a chemical reaction with a positive G endergonic or exergonic?
List the properties of enzymes.
Why is ATP an important metabolic molecule?
Describe the change in free energy at equilibrium.
Increasing substrate concentration has what effect on competitive inhibition?
What is the first law of thermodynamics?
When energy is transformed, what is the effect on entropy in the system?
If temperature is kept uniform in a system, free energy will be what?
If products have less free energy than reactants, is the reaction endergonic or exergonic?
What is catabolism?
How is energy obtained from ATP to energize cellular processes?
If the concentration of reactants is decreased, what effect will this have on the rate of the reaction/
What type of pathways are coupled with anabolic pathways to supply ATP to cells?
Explain enzyme cooperativity & allosteric sites.
Explain the induced fit explanation for enzymes & substrates.
What is free energy?
Describe CO2 fixation & the Calvin cycle in CAM plants.
Photorespiration decrease the efficiency of photosynthesis because it removes what from the Calvin cycle?
What is synthesize across thylakoid membranes?
Why can C4 plants better at photosynthesis without photorespiration?
What pigments can absorb light energy?
Proton gradient are responsible for producing what energy molecules?
Give 2 examples of products of the Calvin cycle that are used in the light reactions?
What 2 main energy molecules are products of the light reactions?
Is glucose required for the Calvin cycle? Explain.
In what reactions is glyceraldehyde phosphate produced?
If a pigment appears red to your eyes, what color of light is not being absorbed?
During what process is CO2 incorporated into PGA?
The chemiosomotic process in chloroplasts occurs when what type of gradient is established?
Name the most abundant protein (enzyme) in the world.
In what tissue does carbon fixation occur in C4 plants before being transferred to bundle-sheath cells?
Photosystem II uses which chlorophyll a molecule?
What gas is required and which gas is not required for photosynthesis to occur?
What is the primary energy source for plants? for animals?
What enzyme catalyzes phosphorylation?
Where in the chloroplast does the Calvin cycle occur?
What type of plants fix CO2 into organic acids during the day?
When does the Calvin cycle in most plants occur?
Which color of light is least effective in driving photosynthesis?
Cyclic electron flow in chloroplasts produces what energy molecule?
Where does the ETS in plants occur?
In terms of energy how are photosynthesis & cellular respiration related?
In what 2 membranes in plant cells is ATP synthetase found?
Is oxygen released in the light or dark reactions of photosynthesis?
Does photophosphorylation occur in Photosystem II?
In which photosystem is water split?
Which process does not give a net gain in ATP —glycolysis, aerobic respiration, or fermentation?
Which would release more energy from glucose — combustion or cellular respiration?
Is ATP a product of lactate fermentation?
If a metabolic poison interferes with glycolysis, what must its structure be most like?
Are water and CO2 end products of glycolysis?
Which has more energy —NAD or NADH?
Oxidative phosphorylation occurs across ___________in a cell.
which has more energy — glucose at the start of glycolysis or the 2 pyruvate molecules at the end of glycolysis?
Molecular oxygen supplies the oxygen atoms during oxidative phosphorylation to form what?
What is chemiosmosis?
Lactate is a byproduct of fermentation in what type of animal cells?
What type of enzyme in cellular respiration helps remove electrons from organic molecules?
The ETS helps a cell generate what energy molecule?
Will glycolysis occur if oxygen is present? Is oxygen needed for the process?
The difference in H+ concentration of either side of the mitochondrial membrane drives the synthesis of what molecule?
Where in a cell will the enzymes needed for glycolysis be found?
Citric acid has 6 carbons. In the Krebs cycle 2 CO2 molecules are given off before succinic acid is formed. How many carbons will succinic acid have?
During substrate-phosphorylation, how many ATP molecules are made each cycle?
Isocritic acid has 6 carbons while ketoglutaric acid in the Krebs cycle only has 5 carbons. What happened to the “missing” carbon?
What gas accepts electrons at the end of the ETS?
Substrate-level phosphorylation during fermentation generates what molecule?
Acetyl CoA is made in muscle cells only under what conditions?
The end products of glycolysis are ATP, NADH, and what carbon molecule?
What 2 electron acceptor molecules in the Krebs cycle convert their energy to ATP in the ETS?
In chemiosmotic phosphorylation what is the direct energy source that drives the conversion of ADP + free P into ATP?
The glycolysis of glucose by a yeast cell nets how many ATP’s?
What intermediary metabolite of pyruvate enters the Krebs cycle?
How is a proton gradient established in the mitochondria?
How many O2 molecules are produced from the complete oxidation of glucose?
What type of animal tissue has a high ATP requirement?