Chromosome Notes

 

 Chromosomes Linkage

Genes on the same chromosome are linked.

Example: Unlinked Genes

G = gray body

g = black (ebony) body

 

R = red eyes

r = purple eyes

The diagrams below show that the locus for body color (G or g) is on a different chromosome than the locus for eye color (R or r).  These two loci will assort independently to produce either GR and gr gametes or Gr and gR gametes.

cross: GgRr X ggrr

gametes: GR, Gr, gR, gr X gr

Ratio expected: 1:1:1:1

Example: Linked Genes

Suppose G and R are linked as shown below. If the body color and eye color loci are on the same chromosome, they will not assort independently unless crossing-over occurs frequently.

In this case, GgRr can produce only two kinds of gametes: GR and gr.

GgRr X ggrr

gametes: GR, gr X gr

If G and R are linked, then whenever you have a G, you have an R. Any gray, purple offspring (G-rr) would result from crossing over because a Gr gamete is needed.

Suppose out of 100 offspring, you got 46 gray, red, 46 black purple, 4 gray purple and 4 black red.  Eight percent of the offspring resulted from crossing over. These offspring are recombinant.

Crossing Over

Crossing over is more likely to occur between genes that are far apart. The farther apart genes are, the greater the probability that crossing over will occur between them.

In the example above, we had 8% crossing over.

The percent of recombination (crossing over) can beused as a measure of how far apart genes are.   1% crossing over = 1 map unit.

Example

G = gray body

g = black (ebony) body

 

R = red eyes

r = purple eyes

Suppose that G and R are linked (on the same chromosome) in a particular individual and g and r are also linked

P1 GgRr X ggrr

If there is no crossing-over, possible gametes for the first parent are GR and gr.

If there is crossing-over, possible gametes are gR and Gr.

the following results were obtained:

How far apart are the G and R loci?

Sex Chromosomes

Humans have 23 pairs of chromosomes (46 total) chromosomes. Two of these are called sex chromosomes, the other 44 are called autosomes.

There are two kinds of sex chromosomes, called the X chromosome and the Y chromosome. The X chromosome is larger and contains many genes. The Y chromosome is much smaller and contains very few genes.

Normally, human females have two X chromosomes (XX) and males have one X and one Y chromosome (XY).

Occasionally, an accident happens in which a person is born with too many or too few sex chromosomes. In these cases, the person will be male if they inherit a Y chromosome and female if they do not.

Examples of four different possibilities that produce males are shown below. The last three are abnormal.

XY
XXY
XXXY
XYY

Examples of four different possibilities that produce females are shown below. Normal females are XX.

X
XX
XXX
XXXX

The cross below shows that normal females produce eggs that have one X chromosome. Half of the sperm produced by normal males have an X chromosome and the other half have a Y chromosome.

XX   x   XY

¯

This analysis shows that half of the offspring are expected to be male, half are expected to be female.

 

Chromosomal Determination of Sex

Males

 

The Y chromosome contains a gene called SRY (for sex-determining region of Y).

 

Females

 

Testicular Feminization

 

The body cells of people with testicular feminization are insensitive to testosterone and therefore develop the female phenotype even though they have a Y chromosome.

It has an X-linked recessive mode of inheritance.

Guevodoces

Guevodoces refers to a condition in which the male phenotype develops after puberty.

It is due to delayed testosterone production.

X-Linkage

Morgan (Columbia U):

P1      red-eyed X white-eyed

¯

F1            all red-eyed

F2           3:1 (red:white) but all white were male

explanation:

These genes are found on the X chromosome but not on the Y chromosome. An XrY male will therefore have red eyes. Details of this cross are below.

P1     XRXR       X XrY
   female male

gametes: XR (female) and Xr, Y (male)

The offspring produced from the above cross are crossed with each other (below):

F1      XRXr   X   XRY

¯

gametes: XR and Xr (from female); XR and Y (from male)

F2:

Notice that there are three possible genotypes for females and two possible genotypes for males.

Females Males
Genotypes Phenotypes Genotypes Phenotypes
XRXR red XRY red
XRXr red XrY white
XrXr white

X-Linked Inheritance

Males inherit their X chromosome from their mother. Their Y chromosome comes from their father. A male, therefore, cannot pass an X-linked trait to his sons. Males inherit all of their X-linked traits from their mother.

If a male inherits an X-linked recessive trait, it will be expressed because males do not have a homologous X chromosome.

Females can be carriers of X-linked traits without expressing them because they might carry the dominant allele on the other X chromosome. For example, the following genotype will have a dominant phenotype: XAXa.

Dosage Compensation

Although females have twice as many X-linked genes, the amount of protein produced by these genes is the same in females as it is in males.

 

Reduced protein production (called dosage compensation) occurs as a result of inactivating one X chromosome by coiling and condensing it. When condensed, it cannot be transcribed, that is, it cannot be used to produce mRNA.

Condensed X chromosomes, called Barr bodies, are visible using ordinary light microscope techniques.

The table below shows the number of Barr bodies in normal cells and in the cells of people with an abnormal number of X chromosomes. Normal males do not have Barr bodies because they only have one X chromosome.

Genetic Condition  

# Barr Bodies per Cell

normal male 0
normal female 1
XXX female 2
XXXX female 3
XXY (Klinefelter male) 1

In summary, one X chromosome remains active, the others are inactivated by forming Barr bodies.

 

Inactivation

 

Inactivation occurs early in embryonic development (12-16 days).

In females, each cell normally contains two X chromosomes. The X chromosome that is inactivated is determined randomly.

img006.gif (6009 bytes)

 

img007.gif (6184 bytes)

Once inactivation occurs, all daughter cells of a particular cell have the same X chromosome inactivated.

All of the “pink” chromosomes in the drawing below (left side of diagram) have been inactivated. All future cells produced by this cell will have the pink chromosome inactivated. In the diagram on the right, all of the blue chromosomes have been inactivated. All future generations of this cell will have the blue chromosome inactivated.

img008.gif (6206 bytes)

Females are therefore mosaics with respect to the X chromosome. Patches of body cells will have the maternally inherited X chromosome inactivated and other patches will have the paternally inherited one inactivated.

 

Example of Mosaicism: Calico Cats

 

A calico cat has patches of orange and patches of black

X = orange

X1 = black

MALES:

XY = orange

X1Y = black

FEMALES:

XX = orange

X1 X1 = black

X X1 = orange or black patches

All cells descended from an X1 cell (X is inactive) are orange-yellow.

All cells descended from an X cell (X1 is inactive) are black.

 

Human Example – Anhydrotic Dysplasia

 

Anhydrotic dysplasia is a disease that results in the absence of sweat glands.

It is inherited as an X-linked recessive disease.

Let X = normal sweat glands and X’ = absence of sweat glands. Normal males are XY. Affected males are X’Y and do not have sweat glands.

Normal females are XX, heterozygous females are XX’ and have patches of skin with sweat glands and patches of skin without sweat glands. Females that are X’X’ do not have sweat glands.

 

Other Information

 

Should heterozygous females for colorblindness be able to see color?

Suppose: X = color vision

x = colorblind

 

The Retina of a heterozygous (Xx) female will have some cells with the “X” inactivated and other cells with the “x” inactivated.

A heterozygous carrier of red-green colorblindness has some colorblind cells in her retina. The non-colorblind cells enable her to see color.

Turner’s syndrome is an abnormality in females where there is only one X chromosome; the other is missing.   These people have abnormalities that will be discussed in the next chapter.   Why aren’t Turners syndrome females normal?  Evidence indicates that some genes in the Barr body remain active. Their DNA is uncoiled and extends from the Barr body. If the Barr bodies of a normal female were missing, she would exhibit Turners Syndrome.

 

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Chromosomes & Human Inheritance Notes

 

Chromosomes & Human Inheritance
All Materials © Cmassengale

 

Chromosomes:

  • Thomas Sutton in 1902 proposed that genes are located on chromosomes
  • Called the Chromosome Theory of Inheritance
  • For most of the life of the cell, chromosomes are too elongated to be seen under a microscope & are  called chromatin
  • Before a cell gets ready to divide, each chromosome is duplicated & condenses into short structures
  • Each chromosome is composed of a single, tightly coiled DNA molecule 
  • The two DNA strands are homologous (duplicates) and are held together by the centromere
  • While they are still attached, the duplicated chromosomes are called sister chromatids

  • Fertilization restores the diploid chromosome number and paired condition for alleles in the zygote
  • Chromosomes can be categorized as two types — autosomes & sex chromosomes
  • Autosomes are non-sex chromosomes that are the same number and kind between sexes
  • Sex chromosomes determine if the individual is male or female
  • Sex chromosomes in the human female are XX and those of the male are XY
  • Males produce X-containing and Y-containing gametes; therefore males determine the sex of offspring

Chromosome Numbers:

  • All animals have a characteristic number of chromosomes in their somatic or body cells called the diploid (or 2n) number.
  • The gametes or sex cells (egg & sperm)  contain half the number of chromosomes as a body cell; known as the haploid number (n) of chromosomes

 

Diploid (2n) numbers of Organisms
Man 46
Dog 78
Fruitfly 8
Crayfish 200
Corn 20

 

Pedigrees:

  • Also called a family tree
  • Squares represent males and circles represent females
  • Horizontal lines connecting a male and female represent mating
  • Vertical lines extending downward from a couple represent their children
  • A shaded symbol means the individual possess the trait
  • Half-shaded symbols are carriers

 

 

Sex Linkage:

  • Thomas Hunt Morgan worked with fruit flies & confirmed that  genes were on chromosomes
    a. Fruit flies are cheaply raised in common laboratory glassware
    b. Females only mate once and lay hundreds of eggs
    c. Fruit fly generation time is short, allowing rapid experiments
  • Experiments involved fruit flies with XY system similar to human system
  • Besides genes that determine sex, sex chromosomes carry many genes for traits unrelated to sex
  • X-linked gene is any gene located on the X chromosome that are missing on the Y chromosome
  • X-linked alleles are designated as superscripts to X chromosome
  • Newly discovered mutant male fruit fly had white eyes


Mutant White-eyed  & Wild, Red-eyed 

  • Cross of white-eyed male with dominant red-eyed female yield expected 3:1 red-to-white ratio; however, all white-eyed flies were males
  • An allele for eye color on the X but not Y chromosome supports the results of the cross
  • Heterozygous females are carriers that do not show the trait but can pass it on
  • Males are never carriers but express the one allele on the X chromosome
  • Red-green color-blindness is X-linked recessive
  • In humans, another well-known X-linked traits is hemophilia (free bleeders that lack clotting factors in their blood)
  • One of the most famous genetic cases involving hemophilia goes back to Queen Victoria who was a carrier for the disorder and married Prince Albert who was normal
  • Their children married other royalty, and spread the gene throughout the royal families of Europe

 

Royal Pedigree

 

Example Sex-Linked Problems:

1. What are the results of crossing a colorblind male with a female carrier for colorblindness?

 

Trait:     Red-Green Colorblindness

Alleles:     XC    normal vision
Xc    colorblindness

XCXc       x    Xc Y

XC Y   Genotypes:    XCXC ,XCY, XCXc, XcY
XC XCXC XCY   Genotypic Ratio: 1:1:1:1
Xc XCXc XcY   Phenotypes:
normal vision female, normal vision male, female carrier, colorblind male

 

2. What are the results of crossing a colorblind male with a colorblind female?

 

 

Trait:     Red-Green Colorblindness

Alleles:     XC    normal vision
Xc    colorblindness

XcXc       x    Xc Y

Xc Y   Genotypes:       XcXc , XcY 
Xc XcXc XcY    Genotypic Ratio: 1:1 ratio
Xc XcXc XcY   Phenotypes:       colorblind female, colorblind male
   Phenotypic ratio:  1:1 ratio

 

 

Linked genes:

  • Each chromosomes has 1000’s of genes
  • All genes on a chromosome form a linkage group that stays together except during crossing-over
  • Some genes located on the same chromosome tend to be inherited together
  • Linked genes were discovered by Thomas Hunt Morgan while studying fruit flies
  • Linked alleles do not obey Mendel’s laws because they tend to go into the gametes together
  • Crosses involving linked genes do not give same results as unlinked genes

Chromosome Mapping:

  • Recombinants result from chromosome crossing over during prophase I of meiosis
  • Geneticists can use recombination data to map a chromosome’s genetic loci (position on a chromosome)
  • A genetic map lists a sequence of genetic loci along a particular chromosome
  • Alfred Sturtevant, a student of Morgan, reasoned that different recombination frequencies reflect different distances between genes on a chromosome
  • The farther apart genes are, the greater likelihood of crossing-over
  • The closer together two genes are, the less likely of crossing-over occurring
  • A map unit equals 1% recombination frequency
  • If 1% of crossing-over equals one map unit, then 6% recombinants reveal 6 map units between genes
  • To determine the frequency of recombinants, the following formula is used:
Number of recombinants x 100%
Recombination Frequency =   ———————————————
     Total Number of Offspring

 

  • Humans have few offspring and a long generation time so biochemical methods are used to map human chromosomes (Human Genome Project)

Chromosome Mutations:

  • Mutations are changes in genes or chromosomes that can be passed on to offspring
  • Mutations increase the number of variations that occur
  • Chromosomal mutations include changes in chromosome number and/or structure
  • Monosomy occurs when an individual has only one of a particular type of chromosome
  • Turner syndrome (X0) is an example of monosomy
  • Trisomy occurs when and individual has three of a particular type of chromosome
  • Examples of trisomy include Klinefelter’s Syndrome (XXY) and Down Syndrome or Trisomy 21 where the individual has three 21st chromosomes
  • Both monosomy & trisomy result when chromosomes fail to separate during meiosis; called nondisjunction
  • Monosomy and trisomy (aneuploidy) occur in plants and animals and may be lethal (deadly)
  • Polyploidy where the offspring have more than two sets of chromosomes occurs often in plants (3n, 4n …)
  • Environmental factors including radiation, chemicals, and viruses, can cause chromosomes to break causing a change in chromosomal structure
  • Inversion occurs when a piece of a chromosome breaks off & reattaches to the same place but in the reverse order
  • Translocation occurs when a chromosome segment breaks off & attaches to a different chromosome
  • Deletions occur when the end of a chromosome breaks off & is lost
  • Cri du chat syndrome (results in retardation & a cat-like cry) is due to a deletion of a portion of chromosome 5
  • Duplications occur when a section of a chromosome is doubled
  • Fragile X Syndrome caused by an abnormal number of repeats (CCG) results in retardation & long, narrow face becomes more pronounced with age

Gene Mutations:

  •  Change in genes caused by change in structure of the DNA
  • DNA bases may be substituted, added, or removed to cause gene mutation
  • When genes are added or removed, the mutation is called a frame shift mutation

Frame shift mutation

  • Adding or Removing genes is called a point mutation

point mutation

  • Sickle cell anemia (red blood cells are C-shaped so can’t carry as much oxygen) is an example of a gene mutation in African Americans

  • Tay-Sachs (a disorder where the nervous system deteriorates) is a fatal gene mutation in Jewish people of Central European Descent
  • Phenylketonuria or PKU occurs from the inability of a gene to synthesize a single enzyme necessary for the normal metabolism of phenylalanine and results in death

 

Class Data Table Sci Meth & Genetics

Table 2

Class Data on Right hand Width and Length (cm)

Class Period:

Student Gender
(M / F)
Hand Length (cm) Hand Width (cm)
1. M / F
2. M / F
3. M / F
4. M / F
5. M / F
6. M / F
7. M / F
8. M / F
9. M / F
10. M / F
11. M / F
12. M / F
13. M / F
14. M / F
15. M / F
16. M / F
17. M / F
18. M / F
19. M / F
20. M / F
21. M / F
22. M / F
23. M / F
24. M / F

Back

Darwin & Natural Selection

 


Charles Robert Darwin
Darwin and Evolution

All Materials © Cmassengale

 

History of Evolution:

  • Plato & Aristotle believed species were fixed & could be arranged according to their complexity
  • In the mid eighteenth century, Carolus Linnaeus developed a system of classification that called binomial nomenclature
  • George Cuvier, in the eighteenth century, explained changes in the fossil record by proposing that a whole series of catastrophes (extinctions) and re-populations from other regions had occurred giving the appearance of change over time
  • Prior to Darwin, it was thought that the world was young & species did not change
  • Lamarck (1744-1829) was first to state that descent with modification occurs and that organisms become adapted to their environments
  • Inheritance of acquired characteristics was the Lamarckian belief that organisms become adapted to their environment during their lifetime and pass on these adaptations to their offspring
  • Lamarck believed that the long necks of giraffes evolved as generations of giraffes reached for ever higher leaves; known as the Law of Use & Disuse

Giraffe neck extension

  • Because it is supported by so many lines of evidence, evolution is no longer considered a hypothesis
  • Evolution is one of the great unifying theories of biology

Darwin’s Background & Voyage:

  • His nature was too sensitive to become a doctor like his father so he studied divinity
  • He attended biology and geology lectures and was tutored by the Reverend John Henslow who arranged his trip on the HMS Beagle
  • In 1831, at the age of 22, Charles Darwin accepted a naturalist position aboard the ship HMS Beagle & began a five-year voyage around the world

Map showing Darwin's voyage on the Beagle

  • He read Principles of Geology by Charles Lyell that stated that the observed massive geological changes were caused by slow, continuous processes (erosion, uplifting…)
  • Darwin carried this book with him on his voyage as he witnessed Argentina coast earthquakes raising the earth several feet, & marine shells occurring far inland and at great heights in the Andes
  • Darwin’s many observations led him to the idea that species slowly change over time
  • Darwin’s comparison of the animals of South America and the Galapagos Islands caused him to conclude that adaptation to the environment can cause diversification, including origin of new species
    Examples: Patagonian hares replaced rabbits in the South American grasslands

The Galapagos Islands:

  • Volcanic islands off the South American coast
  • Island species varied from the mainland species, and from island-to-island
  • Each island had either long or short necked tortoises depending on the island’s vegetation

  • Finches on the Galapagos Islands resembled a mainland finch, but there were more types
  • Bill shapes are adaptations to different means of gathering food. Diversity of bill shape in the Hawaiian honey creeper
  • Galapagos finch species varied by nesting site, beak size, and eating habits


Darwin’s Theory of Evolution:

  • An adaptation is a trait that helps an organism be more suited to its environment
  • Darwin decided adaptations develop over time
  • Natural selection was proposed by both Alfred Russell Wallace and Darwin as a driving mechanism of evolution
  • Darwin and Wallace both read an essay by Thomas Malthus that proposed that human populations outgrow resources so there is a constant struggle for existence

mathusianpopulation.gif (10181 bytes)

  • Fitness is a measure of an organism’s reproductive success
  • Organisms most fit to reproduce are selected by environment which results in adaptation of the population
  • Natural selection is also called “survival of the fittest”
  • Conditions for natural selection include:
    a. Variations exist among members of a population
    b. Many more individuals are produced each generation than will survive
    c. Some individuals are better adapted so they survive & reproduce
    d. Members of a population compete for food, space, mates…
  • Variations that make adaptation possible are those that are passed on generation to generation
  • Extinction occurs when previous adaptations are no longer suitable to a changed environment

On the Origin of Species by Darwin:

  • After the HMS Beagle returned to England in 1836, Darwin waited over 20 years to publish
  • Darwin was forced to publish Origin of Species after reading a similar hypothesis by Alfred Russell Wallace
  • Both men concluded that life forms arose by descent from a common ancestor, and       that natural selection is the mechanism by which species change and new species arise

Fossil Evidence:

  • Fossils are relics or impressions of ancient organisms
  • Most fossils are found in layers (strata) of sedimentary rock

  • The fossil record traces history of life and allows us to study history of particular organisms
  • Through radioactive dating, geologists estimate the age of the earth at about 4.6 billion years

 

ERA PERIOD EPOCH DATES
MYA
AGE of Notes
Cenozoic Quaternary Holocene 0-2 Mammals Humans
Pleistocene  Other Mammal Species
Tertiary Pliocene 2-5
Miocene 5-24
Oligocene 24-37
Eocene 37-58
Paleocene 58-66 Extinction of dinosaurs
Mesozoic Cretaceous 66-144 Reptiles Flowering plants
Jurassic 144-208 1st birds & mammals
Triassic 208-245 First Dinosaurs
Paleozoic Permian 245-286 Amphibians End of trilobites
Carboniferous Pennsylvanian 286-320 First reptiles
Mississippian 320-360 Large primitive trees
Devonian 360-408 Fishes First amphibians
Silurian 408-438 First land plant fossils
Ordovician 438-505 Invertebrates First Fish
Cambrian 505-570 1st shells, trilobites dominant

Precambrian

570-2,500 1st Multi-celled organisms
2,500-3,800 1st one-celled organisms
3,800-4,600

 

 

  • Fossils are at least 10,000 years old and include skeletons, shells, seeds, insects trapped in amber, imprints of organisms, organisms frozen in ice (wooly mammoth),  or trapped in tar pits (saber-toothed tiger)
  • Transitional forms reveal links between groups (Example: Therapsids were mammal-like reptiles and Pterosaurs were bird like reptiles)

pterosaur_flying.gif (50359 bytes)
PTEROSAURS

Biogeographical Evidence:

  • Biogeography is the study of the geographic distribution of life forms on earth
  • Physical factors, such as the location of continents, determine where a population can spread
  • Example: Placental mammals arose after Australia separated from the other continents, so only marsupials diversified in Australia

 

KOALA KANGAROO

 

Anatomical Evidence:

  • Organisms have anatomical similarities when they are closely related because of common descent
  • Homologous structures in different organisms are inherited from a common ancestor have have similar structures
  • Example : Vertebrate forelimbs contain the same sets of bones organized in similar ways, despite their dissimilar functions

  • Analogous structures are inherited from different ancestors and have come to resemble each other because they serve a similar function
  • Example: Bird wing & bat wing are both for flight but they are structurally different
  • Vestigial Structures are remains of a structure that is no longer functional but show common ancestry
  • Example: Humans have a tailbone but no tail

Embryological Evidence:

  • During development, all vertebrates have a post-anal tail and paired pharyngeal pouches
  • Organisms that show similarities in their embryonic development may have a common ancestry

Biochemical Evidence:

  • Almost all living organisms use the same basic biochemical molecules, e.g., DNA, ATP, enzymes …
  • Similarities in amino acid sequences, DNA codes, etc. can be explained by descent from a common ancestor

Examples of Evolution in Modern Times:

  • Peppered moth — light colored vs. dark colored (industrialization influence) Manchester, England
  • Insect resistance to insecticides
  • Bacterial resistance to antibiotics