Photosynthesis

Photosynthesis
All Materials © Cmassengale

I. Capturing the Energy of Life

  1. All organisms require energy
  2. Some organisms (autotrophs) obtain energy directly from the sun and store it in organic compounds (glucose) during a process called photosynthesis

6CO2 + 6H2O + energy –>  6O2 + C6H12O6

II. Energy for Life Processes

  1. Energy is the ability to do work
  2. Work for a cell includes growth & repair, active transport across cell membranes, reproduction, synthesis of cellular products, etc.
  3. Work is the ability to change or move matter against other forces (W = F x D)
  4. Autotrophs or producers convert sunlight, CO2, and H2O into glucose (their food)
  5. Plants, algae, and blue-green bacteria, some prokaryotes, are producers or autotrophs
  6. Only 10% of the Earth’s 40 million species are autotrophs
  7. Other autotrophs use inorganic compounds instead of sunlight to make food; process known as chemosynthesis
  8. Producers make food for themselves and heterotrophs or consumers that cannot make food for themselves
  9. Heterotrophs include animals, fungi, & some bacteria, & protists

III.      Biochemical Pathways

  1. Photosynthesis and cellular respiration are biochemical pathways
  2. Biochemical pathways are a series of reactions where the product of one reaction is the reactant of the next
  3. Only autotrophs are capable of photosynthesis
  4. Both autotrophs & heterotrophs perform cellular respiration to release energy to do work
  5. In photosynthesis, CO2(carbon dioxide) and H2O (water) are combined to form C6H12O6 (glucose) & O2 (oxygen)
    6CO2 + 6H2O + energy –>  6O2 + C6H12O6
  6. In cellular respiration, O2 (oxygen) is used to burn C6H12O6 (glucose) & release CO2(carbon dioxide), H2O (water), and energy 
  7. Usable energy released in cellular respiration is called adenosine triphosphate or ATP

 

IV. Light Absorption in Chloroplasts

  1. Chloroplasts in plant & algal cells absorb light energy from the sun during the light dependent reactions
  2. Photosynthetic cells may have thousands of chloroplasts
  3. Chloroplasts are double membrane organelles with the an inner membrane folded into disc-shaped sacs called thylakoids
  4. Thylakoids, containing chlorophyll and other accessory pigments, are in stacks called granum (grana, plural)
  5. Grana are connected to each other & surrounded by a gel-like material called stroma
  6. Light-capturing pigments in the grana are organized into photosystems

 V. Pigments

  1. Light travels as waves & packets called photons
  2. Wavelength of light is the distance between 2 consecutive peaks or troughs

  1. Sunlight or white light is made of different wavelengths or colors carrying different amounts of energy
  2. A prism separates white light into 7 colors (red, orange, yellow, green, blue, indigo, & violet) ROY G. BIV
  3. These colors are called the visible spectrum

  1. When light strikes an object, it is absorbed, transmitted, or reflected
  2. When all colors are absorbed, the object appears black
  3. When all colors are reflected, the object appears white
  4. If only one color is reflected (green), the object appears that color (e.g. Chlorophyll)
VI. Pigments in the Chloroplasts

 

chlorophyll is found only in the chloroplasts
  1. Thylakoids contain a variety of pigments ( green red, orange, yellow…)
  2. Chlorophyll  (C55H70MgN4O6) is the most common pigment in plants & algae
  3. Chlorophyll a & chlorophyll b are the 2 most common types of chlorophyll in autotrophs
  4. Chlorophyll absorbs only red, blue, & violet light
  5. Chlorophyll b absorbs colors or light energy NOT absorbed by chlorophyll a
  6. The light energy absorbed by chlorophyll b is transferred to chlorophyll a in the light reactions

structural formula of chlorophyll

  1. Carotenoids are accessory pigments in the thylakoids & include yellow, orange, & red

 

VII. Overview of Photosynthesis        6CO2 + 6H2O C6H12O6 + 6O2

  1. Photosynthesis is not a simple one step reaction but a biochemical pathway involving many steps
  2. This complex reaction can be broken down into  two reaction systems — light dependent & light independent or dark reactions
  • Light Reaction:         H2O O2 + ATP + NADPH2
    • Water is split, giving off oxygen.
    • This system depends on sunlight for activation energy.
    • Light is absorbed by chlorophyll a which “excites” the electrons in the chlorophyll molecule.
    • Electrons are passed through a series of carriers and adenosine triphosphate or ATP (energy) is produced.
    • Takes place in the thylakoids.
  • Dark Reaction:         ATP + NADPH2 + CO2 C6H12O6
    • Carbon dioxide is split, providing carbon to make sugars.
    • The ultimate product is glucose.
    • While this system depends on the products from the light reactions, it does not directly require light energy.
    • Includes the Calvin Cycle.
    • Takes place in the stroma.

VIII. Calvin Cycle

  1. Carbon atoms from CO2 are bonded or “fixed” into organic compounds during a process called carbon fixation
  2. The energy stored in ATP and NADPH during the Light Reactions is used in the Calvin cycle
  3. The Calvin cycle has 3 main steps occurring within the stroma of the Chloroplast

     STEP 1

  • CO2 diffuses into the stroma from surrounding cytosol
  • An enzyme combines a CO2 molecule with a five-carbon carbohydrate called RuBP
  • The six-carbon molecule produced then splits immediately into a pair of three-carbon molecules known as PGA

      STEP 2

  • Each PGA molecule receives a phosphate group from a molecule of ATP
  • This compound then receives a proton from NADPH and releases a phosphate group producing PGAL
  • These reactions produce ADP, NADP+, and phosphate which are used again in the Light Reactions.

   STEP 3

  • Most PGAL is converted back to RuBP to keep the Calvin cycle going
  • Some PGAL leaves the Calvin Cycle and is used to make other organic compounds including amino acids, lipids, and carbohydrates
  • PGAL serves as the starting material for the synthesis of glucose and fructose
  • Glucose and fructose make the disaccharide sucrose, which travels in solution to other parts of the plant (e.g., fruit, roots)

movements within plants

  • Glucose is also the monomer used in the synthesis of the polysaccharides starch and cellulose

  1. Each turn of the Calvin cycle fixes One CO2 molecule so it takes six turns to make one molecule of glucose

IX. Photosystems & Electron Transport Chain

  1. Only 1 in 250 chlorophyll molecules (chlorophyll a) actually converts light energy into usable energy
  2. These molecules are called reaction-center chlorophyll
  3. The other molecules (chlorophyll b, c, & d and carotenoids) absorb light energy and deliver it to the reaction-center molecule
  4. These chlorophyll molecules are known as antenna pigments
  5. A unit of several hundred antenna pigment molecules plus a reaction center is called a photosynthetic unit or photosystem
  6. There are 2 types of photosystems — Photosystem I & Photosystem II
  7. Light is absorbed by the antenna pigments of photosystems II and I
  8. The absorbed energy is transferred to the reaction center pigment, P680 in photosystem II, P700 in photosystem I
  9. P680 in Photosystem II loses an electron and becomes positively charged so it can now split water & release electrons  (2H2O   4H+   +   4e-   +  O2)
  10. Electrons from water are transferred to the cytochrome complex of Photosystem I
  11. These excited electrons activate P700 in photosystem I which helps reduce NADP+ to NADPH
  12. NADPH is used in the Calvin cycle
  13. Electrons from Photosystem II replace the electrons that leave chlorophyll molecules in Photosystem I

X. Chemiosmosis (KEM-ee-ahz-MOH-suhs)

  1. Synthesis or making of ATP (energy)
  2. Depends on the concentration gradient of protons ( H+) across the thylakoid membrane
  3. Protons (H+) are produced from the splitting of water in Photosystem II
  4. Concentration of Protons is HIGHER in the thylakoid than in the stroma
  5. Enzyme, ATP synthetase in the thylakoid membrane, makes ATP by adding a phosphate group to ADP

XI. Alternate Pathways

  1. The Calvin cycle is the most common pathway used by autotrophs called C3 Plants
  2. Plants in hot, dry climates use alternate pathways to fix carbon & then transfer it to the Calvin cycle
  3. Stomata are small openings on the underside of leaves for gas exchange (O2 & CO2)
  4. Guard cells on each side of the stoma help open & close the stomata
  5. Plants also lose H2O through stoma so they are closed during the hottest part of the day

  1. C4 plants  fix CO2 into 4-Carbon Compounds during the hottest part of the day when  their stomata are partially closed
  2. C4 plants include corn, sugar cane and crabgrass
  3. CAM plants include cactus & pineapples
  4. CAM plants open their stomata at night and close during the day so CO2 is fixed at night
  5. During the day, the CO2 is released from these compounds and enters the Calvin Cycle

XII. Factors Determining the Rate of Photosynthesis

  1. Light intensity – As light intensity increases, the rate of photosynthesis initially increases and then levels off to a plateau
  2. Temperature – Only the dark, not the light reactions are temperature dependent because of the enzymes they use (25 oC to 37oC)
  3. Length of day
  4. Increasing the amount of carbon dioxide available improves the photosynthesis rate
  5. Level of air pollution

 

 

BACK

 

pH in Living Systems

 

 

pH and Living Systems

 

Introduction:

Scientists use something called the pH scale to measure how acidic or basic a liquid is. The scale goes from 0 to 14. Distilled water is neutral and has a pH of 7. Acids are found between 0 and 7. Bases are from 7 to 14. Most of the liquids you find every day have a pH near 7. They are either a little below or a little above that mark. When you start looking at the pH of chemicals, the numbers go to the extremes. Substances with the highest pH (strong bases) and the lowest pH (strong acids) are very dangerous chemicals. Molecules that make up or are produced by living organisms usually only function within a narrow pH range (near neutral) and a narrow temperature range (body temperature). Many biological solutions, such as blood, have a pH near neutral.

The biological molecule used in this lab is a protein found in milk. Proteins are used to build cells and do most of the cell’s work. They also act as enzymes. For proteins to work, they must maintain their globular shape. Changing the shape of a protein denatures and the protein will no longer work.

Materials:

Small squares of wide-range pH paper, pH color chart, paper towels, 4 dropper bottles, ammonia, lemon juice, skim milk, distilled water, forceps, 50 ml beakers, small squares of narrow-range pH paper, 2 stirring rods

Procedure (part A): Testing the pH of Substances

  1. Line up 4 squares of wide-range pH paper about 1 cm apart on a paper towel.
  2. Put one drop of distilled water on the pH square.
  3. Compare the color of the pH paper to the color chart and record the pH in data table 1.
  4. Repeat this procedure for the ammonia, lemon juice, and skim milk.

Questions (Part A): Determining the pH of Solutions

  1. Which substance was the most acidic?
  2. Which substance was the most basic?
  3. Did any of the substances have a pH close to neutral? Name them.

Procedure (part B): Showing the Effect of pH on a Biological Molecule (Milk Proteins)

  1. Place 100 drops of skim milk in a 50 ml beaker.
  2. Pick up a piece of narrow-range pH paper with forceps.
  3. Touch the pH paper to the milk and remove it.
  4. Compare the color of the pH paper to the pH color chart.
  5. Record the initial pH in data table 2.
  6. Add a drop of lemon juice to the milk in the cup & stir with a stirring rod. Keep track of how many drops you add to the milk!
  7. Measure and record the pH of the solution with the narrow-range pH paper.
  8. Repeat step 7 until you notice an obvious change in the appearance of the milk. record this final pH and appearance of the milk in your data table.
  9. Repeat steps 1-8 using a clean 50 ml beaker and fresh milk, and substitute ammonia for the lemon juice.
  10. Add drops of ammonia to the milk until the change in pH of the milk is equal to the change in pH you measured in step 8. Be sure to keep track of the number of drops added. HINT: If the pH changed by 2 units with the lemon juice, then add ammonia until you also get 2 pH units of change!

Data:

Table 1

 

Substance Tested pH Acid Base Neutral

 

Table 2

Substance Tested Substance used to Produce Change Starting pH of Milk Final pH of Milk Original Appearance of Milk Final Appearance of Milk Total Number of drops added to Produce the change
100 drops Skim Milk Lemon Juice
100 drops Skim Milk Ammonia

Questions:

1. Which substance tested from table 1 was the most acidic?

2. Which substance was most basic?

3. Did any substance from table 1 have a neutral, or near neutral pH? If so, which substance was neutral?

4. Why did you use narrow-range pH paper to measure the milk’s change in pH?

 

5. Describe the change in appearance of the milk as more lemon juice was added. Explain why this change occurred.

 

 

6. How much did the pH of milk change when lemon juice was added?

7. Why do you think lemon juice “curdled”  (precipitated out the proteins) from the milk?

 

8. Did you get the same change when ammonia was used? Why or why not?

 

 

 

Mrs Nerg

 

      Seven Life Processes
Movement

Reproduction

Sensitivity

Nutrition

Excretion

Respiration

Growth

Mrs Nerg

MRS NERG

 

What one MAIN characteristic do ALL organisms have in common?

They’re all made of cells!

Nucleotide Model preap

 

Model of a Nucleotide

 

Introduction

Nucleotides consist of three parts — a pentose sugar, a nitrogen-containing base, and a phosphate group. A pentose sugar is a five-sided sugar. There are 2 kinds of pentose sugars — deoxyribose and ribose. Deoxyribose has a hydrogen atom attached to its #2 carbon atom (designated 2′), and ribose has a hydroxyl group atom there. Deoxyribose-containing nucleotides are the monomers of DNA, while Ribose-containing nucleotides are the monomers of RNA.

A nitrogen-containing ring structure is called a base. The base is attached to the 1′ carbon atom of the pentose. In DNA, four different bases are found — two purines, called adenine (A) and guanine (G) and two pyrimidines, called thymine (T) and cytosine (C). RNA contains The same purines, adenine (A) and guanine (G).  RNA also uses the pyrimidine cytosine (C), but instead of thymine, it uses the pyrimidine uracil (U).

 

The Purines The Pyrimidines

The combination of a base and a pentose is called a nucleoside.  A phosphate group is attached to the 5′ carbon of the pentose sugar.

Objective

Students will construct a 3-dimensional model of a single nucleotide, the monomer of which nucleic acids are composed.

Materials

Various materials may be used for the atoms that make up a nucleotide such as styrofoam balls, plastic coke bottle caps, beads, etc. Bonds between atoms may be made from toothpicks, plastic stirring sticks, popsicle sticks, etc. Single & double bonds must be represented by the correct number of “sticks”. The atoms and bonds may NOT be made of any food item. Your model should be glued together to make the model rigid for hanging. Attach string and a label with the nucleotide’s name to your model. Models must be sturdy, light weight, and small enough to hang from the ceiling.

Color Code for atoms:

CARBON – BLACK
HYDROGEN – YELLOW
OXYGEN – RED
NITROGEN – BLUE

Structural Formulas of Nucleotides:

Uracil Nucleotide (Ribose ) & Thymine Nucleotide (Deoxyribose)

 

Adenine Nucleotide (Deoxyribose)
Cytosine Nucleotide (Deoxyribose)
Guanine Nucleotide (Deoxyribose)
 

 

 

Natural Selection Activity

 

Survival of the Fittest

 

Introduction:

  Within a population, organisms will vary.  Charles Darwin stated that in the struggle for existence, those variant organisms that have favorable variations are “better adapted” to their environment and will survive and reproduce in greater numbers.  Favorable variations may mean that they are faster, or stronger, or able to eat different types of food, or better camouflaged to avoid predators.  In this lab you will simulate the effect of predation by a hawk on a large population of assorted mice.  Your population of mice will consist of black, white, and speckled mice.  You will represent the hawk.

Objectives:

 to simulate the effect of hawk predation on the appearance of mice
-to simulate the natural selection of traits

Materials:

large sheet of newspaper  4 hawks (students)
30 white mice (paper squares) 1 petri dish
30 speckled mice (paper squares)
30 black mice (paper squares)

Procedure:

  1. Open your sheet of newspaper and place it on the lab table.  This will serve as the environment for your mice.
  2. Place the petri dish on the other side of the lab table.  This will be the nest.
  3. Select one person from your group to act as a hawk.  This person should stand by the nest.
  4. Spread the mice on their environment evenly.
  5. The hawk now swoops over and has 1 minute to pick up as many mice as possible. The hawk may only pick up one mouse at a time, and must place it in their nest (a petri dish) before flying back to pick up another.  The goal is to pick up as many mice as possible in the time period.
  6. When the time is up record the number of mice left in the environment in the data table below.
  7. Repeat this procedure for each person in the lab group or 4 times. 
  8. After all data is collected, construct a bar graph. Be sure to label the graph and its axes.
  9. Data:

 

White
mice
Speckled mice
Black
mice
Hawk #1  

 

Hawk #2  

 

Hawk #3  

 

Hawk #4  

 

Total  

 

 

Conclusion:
 Write a paragraph describing;

* the purpose of the lab

* what you thought the results would be

* what the results were (discussing numbers from data)

*how the mouse population and hawk population may change over time from natural selection