Nucleotide Model preap

 

Model of a Nucleotide

 

Introduction

Nucleotides consist of three parts — a pentose sugar, a nitrogen-containing base, and a phosphate group. A pentose sugar is a five-sided sugar. There are 2 kinds of pentose sugars — deoxyribose and ribose. Deoxyribose has a hydrogen atom attached to its #2 carbon atom (designated 2′), and ribose has a hydroxyl group atom there. Deoxyribose-containing nucleotides are the monomers of DNA, while Ribose-containing nucleotides are the monomers of RNA.

A nitrogen-containing ring structure is called a base. The base is attached to the 1′ carbon atom of the pentose. In DNA, four different bases are found — two purines, called adenine (A) and guanine (G) and two pyrimidines, called thymine (T) and cytosine (C). RNA contains The same purines, adenine (A) and guanine (G).  RNA also uses the pyrimidine cytosine (C), but instead of thymine, it uses the pyrimidine uracil (U).

 

The Purines The Pyrimidines

The combination of a base and a pentose is called a nucleoside.  A phosphate group is attached to the 5′ carbon of the pentose sugar.

Objective

Students will construct a 3-dimensional model of a single nucleotide, the monomer of which nucleic acids are composed.

Materials

Various materials may be used for the atoms that make up a nucleotide such as styrofoam balls, plastic coke bottle caps, beads, etc. Bonds between atoms may be made from toothpicks, plastic stirring sticks, popsicle sticks, etc. Single & double bonds must be represented by the correct number of “sticks”. The atoms and bonds may NOT be made of any food item. Your model should be glued together to make the model rigid for hanging. Attach string and a label with the nucleotide’s name to your model. Models must be sturdy, light weight, and small enough to hang from the ceiling.

Color Code for atoms:

CARBON – BLACK
HYDROGEN – YELLOW
OXYGEN – RED
NITROGEN – BLUE

Structural Formulas of Nucleotides:

Uracil Nucleotide (Ribose ) & Thymine Nucleotide (Deoxyribose)

 

Adenine Nucleotide (Deoxyribose)
Cytosine Nucleotide (Deoxyribose)
Guanine Nucleotide (Deoxyribose)
 

 

 

Mollusk

Mollusks


All Materials © Cmassengale  

Phylum Mollusca
Characteristics

  • Soft-bodied invertebrate covered with protective mantle that may or may not form a hard, calcium carbonate shell
  • Includes chitons, snails, slugs, clams, oysters, squid, octopus, & nautilus
  • Second largest animal phylum
  • Have a muscular foot for movement which is modified into tentacles for squid & octopus
  • Complete, one-way digestive tract with a mouth & anus
  • Have a fully-lined coelom
  • Cephalization – have a distinct head with sense organs & brain
  • Have a scraping, mouth-like structure called the radula
  • Go through free-swimming larval stage called trochophore


Trochophore Larva

  • Body organs called visceral mass lie below mantle
  • Have circulatory, respiratory, digestive, excretory, nervous, & reproductive systems
  • Bilaterally symmetrical
  • Most have separate sexes that cross-fertilize eggs
  • Gills between the mantle & visceral mass are used for gas exchange
  • Includes 4 classes — Polyplacophora (chitons), Gastropoda (snails, slugs, nudibranchs, conchs & abalone), Pelecypoda or Bivalvia (clams, oysters, & mussels), & Cephalopoda (squid, octopus, & nautilus)


SNAIL, CLAM, CHITON, & SQUID

Class Polyplacophora
Characteristics

  • All marine
  • Have a shell divided into 8 over-lapping plates
  • Live on rocks along seashore feeding on algae


CHITON

Class Gastropoda
Characteristics

  • Head has a pair of retractable tentacles with eyes located at the ends
  • Have a single shell or valve (snails) or none (slugs)
  • Known as univalves
  • Snails
    * May be marine, freshwater, or terrestrial
    * Aquatic snails breathe through gills & use their radula to scrape algae for food
    * Terrestrial snails use their mantle cavity as a modified lung & saw off leaves
    * Retreat into shell in dry periods & seals opening with mucus
    * Have open circulatory system
    * Secrete mucus & use muscular foot to move
    * Land snails are hermaphrodites
    * Aquatic snails have separate sexes
    * Use internal fertilization

  • Slugs
    * Live in moist terrestrial areas
    * Lack a shell


SLUG

  • Pteropods
    * Called “sea butterflies”
    * Marine
    * Have a wing-like flap for swimming


“SEA BUTTERFLY”

  • Oyster Drills
    * Radula modified to drill into oyster shells


OYSTER DRILL

  • Nudibranch
    * Marine slug
    * Lacks shell


NUDIBRANCH

Class Bivalvia or Pelecypoda
Characteristics

  • Sessile or sedentary
  • Includes marine clams, oysters, shipworms, & scallops and freshwater mussels
  • Filter feeders
  • Have two-part, hinged shell (2 valves)
  • Have muscular foot that extends from shell for movement
  • Scallops clap valves together to move

  • Shell secreted by mantle & made of 3 layers — outer horny layer protects against acids, middle prismatic layer made of calcium carbonate for strength, & inner pearly layer next to soft body
  • Mantle secretes substance called “mother of pearl” to surround irritants like grains of sand
  • Oldest, raised part of shell called umbo
  • Powerful anterior & posterior adductor muscles open & close shell
  • Lack a distinct head
  • Have an incurrent & excurrent siphon that circulate water over the gills to remove food & oxygen

INTERNAL CLAM ANATOMY

  • Have heart & open circulatory system
  • Nervous system made of 3 pairs of ganglia, nerve cords, & sensory cells that detect light, chemicals, & touch
  • Separate sexes with external fertilization of eggs

Class Cephalopoda or Amphineura
Characteristics

  •  Includes octopus, squid, cuttlefish, & chambered nautilus  
  • All marine  

 

NAUTILUS OCTOPUS SQUID

 

  • Most intelligent mollusk
  • Well developed head
  • Active, free swimming predators
  • Foot divided into tentacles with suckers
  • Use  their radula & beak to feed
  • Closed circulatory system
  • Lack an external shell
  • Highly developed nervous system with vertebrate-like eyes
  • Separate sexes with internal fertilization

  • Squid
    * Largest invertebrate is the Giant Squid
    * Large, complex brain
    * Ten tentacles with longest pair to catch prey
    * Use jet propulsion to move by forcing water out their excurrent siphon
    * Chromatophores in the skin can help change squid color for camouflage
    * Can squirt an inky substance into water to temporarily blind predators
    * Have internal shell called pen
    * Female lays eggs in jellylike material & protects them until hatching


GIANT SQUID

  • Octopus
    * Eight tentacles
    * Similar to squid
    * Crawls along bottom looking for prey


OCTOPUS

  • Chambered Nautilus
    * Has an exterior shell
    * Lives in the outer chamber of the shell
    * Secretes gas into the other chambers to adjust buoyancy


NAUTILUS

Economic Importance of Mollusks

  • Used  by humans for food
  • Pearls from oysters
  • Shells used for jewelry
  • Do crop & garden damage
  • Serve as intermediate hosts for some parasites such as flukes
Back

 

Natural Selection Activity

 

Survival of the Fittest

 

Introduction:

  Within a population, organisms will vary.  Charles Darwin stated that in the struggle for existence, those variant organisms that have favorable variations are “better adapted” to their environment and will survive and reproduce in greater numbers.  Favorable variations may mean that they are faster, or stronger, or able to eat different types of food, or better camouflaged to avoid predators.  In this lab you will simulate the effect of predation by a hawk on a large population of assorted mice.  Your population of mice will consist of black, white, and speckled mice.  You will represent the hawk.

Objectives:

 to simulate the effect of hawk predation on the appearance of mice
-to simulate the natural selection of traits

Materials:

large sheet of newspaper  4 hawks (students)
30 white mice (paper squares) 1 petri dish
30 speckled mice (paper squares)
30 black mice (paper squares)

Procedure:

  1. Open your sheet of newspaper and place it on the lab table.  This will serve as the environment for your mice.
  2. Place the petri dish on the other side of the lab table.  This will be the nest.
  3. Select one person from your group to act as a hawk.  This person should stand by the nest.
  4. Spread the mice on their environment evenly.
  5. The hawk now swoops over and has 1 minute to pick up as many mice as possible. The hawk may only pick up one mouse at a time, and must place it in their nest (a petri dish) before flying back to pick up another.  The goal is to pick up as many mice as possible in the time period.
  6. When the time is up record the number of mice left in the environment in the data table below.
  7. Repeat this procedure for each person in the lab group or 4 times. 
  8. After all data is collected, construct a bar graph. Be sure to label the graph and its axes.
  9. Data:

 

White
mice
Speckled mice
Black
mice
Hawk #1  

 

Hawk #2  

 

Hawk #3  

 

Hawk #4  

 

Total  

 

 

Conclusion:
 Write a paragraph describing;

* the purpose of the lab

* what you thought the results would be

* what the results were (discussing numbers from data)

*how the mouse population and hawk population may change over time from natural selection

 

Moss & Fern

Mosses & Ferns
fern gametophyte
Kingdom Plantae
All Materials © Cmassengale   

Seedless Nonvascular Plants

  • Includes mosses, liverworts, and hornworts
  • Lack vascular tissue (xylem & phloem) to carry water & food
  • Have a Sporophyte & Gametophyte stage known as alternation of generations
  • Gametophyte is dominant stage
  • Reproduce by spores

Division  Bryophyta

 Mosses:

  • Small, nonvascular land plants
  • No true roots, stems, or leaves
  • Class Musci
  • Most common bryophyte
  • Grow on moist areas (brick walls, as thick mats on forest floors, and on the shaded side of trees)
  • Some can survive periodic dry spells & revive when H2O becomes available
  • Must grow close together and must have H2O to complete their life cycle 
  • Sperm swims to egg through drops of water during fertilization
  • H2O moves cell-to-cell by osmosis
  • Sphagnum moss is known for its moisture holding capacity, absorbing up to 20 times its dry weight with water.


MOSS SPOROPHYTES & FERN GAMETOPHYTES

LIFE CYCLE OF MOSSES:

  • Mosses alternate between a haploid (n) gametophyte stage & a diploid (2n) sporophyte stage 
  • Gametophyte is the dominant generation

 

Moss Gametophyte Moss Sporophyte
Polytrichum formosum with moss flowers Tortula muralis?

 

  • Called alternation of generations

  • The haploid gametophyte stage contains half the chromosome number & produces gametes (egg & sperm) 
  • Gametophyte stage is dominant in the moss’s life cycle
  • Gametophytes are photosynthetic & have root-like rhizoids
  • The diploid sporophyte has a complete set of chromosomes & produces spores by meiosis
  • Sporophyte of a moss is smaller than, & attached to the Gametophyte
  • Sporophytes lack chlorophyll & depend on the photosynthetic gametophyte for food
  • Sporophyte has a long, slender stalk topped with a capsule
  • Capsule forms haploid (n) spores 


Moss Capsules

Sexual Reproduction in Moss:

  • Mosses produce 2 kinds of gametes (egg & sperm)
  • Gametes of Bryophytes are surrounded by a jacket of sterile cells that keep the cells from drying out
  • Female gametes or eggs are larger with more cytoplasm & are immobile
  • Flagellated sperm must swim to the egg through water droplets for fertilization
  • Moss gametes form in separate reproductive structures on the Gametophyte — Archegonium & Antheridium

 

Archegonium Antheridium
moss archegonial head X 40.jpg (102370 bytes) Mnium antheridial head 40X.jpg (660893 bytes)

 

  • Each Archegonium forms one egg, but each Antheridium forms many sperm
  • Fertilization can occur only after rain when the Gametophyte is covered with water
  • Sperms swim to the egg by following a chemical trail released by the egg 
  • A zygote (fertilized egg) forms that undergoes mitosis and becomes a Sporophyte
  • Cells inside mature Sporophyte capsule undergoes meiosis and form haploid spores
  • Haploid spores germinate into juvenile plants called protonema
  • Protonema begin the Gametophyte generation

Protonema of Funaria hygrometrica
Protonema

  • Spores are carried by wind & sprout on moist soil forming a new Gametophyte

Asexual reproduction in Mosses:

  • Asexual reproduction in moss may occur by fragmentation or gemmae
  • Pieces of a Gametophyte can break off & form new moss plants (fragmentation)
  • Gemmae are tiny, cup shaped structures on the Gametophytes 
  • Raindrops separate gemmae from the parent plant so they can spread & form new Gametophytes

 

Gemmae cups

 

Uses for Moss:

  • Help decomposer dead logs
  • Serve as pioneer plants on bare rock or ground
  • Help prevent erosion
  • Provide shelter for insects & small animals
  • Used as nesting materials by birds & mammals
  • Sphagnum or peat moss forms peat bogs (wet ecosystem)
  • Peat is burned as fuel in some areas

Division  Hepatophyta  

Liverworts:

  • Nonvascular
  • Undergo alternation of generations with Sporophyte attached to Gametophyte
  • Gametophytes are green & leafy and the dominant generation


Liverwort

  • Need abundant water for fertilization
  • Reproduce by spores
  • Grow on moist rocks or soil
  • Reproduce asexually by gemmae and by growing new branches

Division  Anthocerophyta

Hornworts:

  • Small, nonvascular bryophytes
  • Gametophyte leafy like liverworts
  • Archegonia & antheridia form inside the plant
  • After fertilization, zygotes develop into long, horn-shaped Sporophytes
  • Horn-shaped Sporophytes capable of photosynthesis so not completely dependent on Gametophyte


Hornwort

Seedless Vascular Plants

  • Includes club mosses, whisk ferns, horsetails, & ferns
  • Have specialized vascular tissues (xylem & phloem) to transport H2O, food, etc.
  • Have a Sporophyte & Gametophyte stage known as alternation of generations
  • Sporophyte is the dominant stage
  • Reproduce by spores

Division  Psilophyta

Whisk Ferns:

  • Photosynthetic, aerial stem forks repeatedly to form a small twiggy bush
  • No true roots, stems, or leaves
  • Have horizontal, underground stems called rhizomes
  • Root-like structures called rhizoids anchor plant
  • Reproduce by spores & vegetatively from rhizomes
  • Only 2 living genera


Whisk Fern

Division  Lycophyta

Club Mosses:

  • Low growing plants resembling pine trees
  • Have a club-shaped spore producing structure


Club Moss

  • Some like Lycopodium contain chemicals that burn quickly
  • Resurrection moss is green (after rains) when moist and brown when dry.

 

Resurrection Plant
resurrection plant

 

Division  Sphenophyta

Horsetails:

  • Equisetum called scouring rush is the only living species
  • Photosynthetic aerial stems & underground rhizomes
  • Stems contain silica & were once used to scrub pots
  • Reproduce by means of spores made in small cones at the tip of branches
  • In prehistoric times, some plants of this family grew to be large trees
  • Found in wetlands


Horsetail

Division  Pterophyta

Fern Gametophyte:

  • Largest group of living seedless vascular plants
  • Live in moist habitats
  • Alternates between dominant Sporophyte stage & Gametophyte stage
  • Sporophyte stage has true roots, stems, & leaves
  • Produce spores on the underside of leaves 

fern sporangia.jpg (47544 bytes)

  • Leaves are called fronds & are attached by a stem-like petiole


FERNS

Fern Life Cycle:

  • Spores produced on underside of fronds in clusters of sporangia called sori
  • Spores undergo meiosis, are spread by wind, & germinate on moist soil to form prothallus
  • Prothallus begins the Gametophyte stage
  • Mature Gametophytes are small, heart-shaped structures that live only a short time
  • Male antheridia & female archegonia grow on the prothalli
  • Sperm must swim to the egg to fertilize it & developing embryo becomes the Sporophyte generation
  • Newly forming fronds are called fiddleheads & uncurl

Uses for Ferns:

  • Prevent erosion
  • Fiddleheads serve as food
  • Ornamental plants
  • Formed coal million of years ago
BACK

 

Natural Selection Peanut Activity

 

Natural Selection Within a Species

 

Introduction:

Natural selection is the evolutionary process by which the most adaptable individuals survive. An adaptation is an inherited variation that helps an organism to survive. When the organism survives, its chances of reproduction are increased as well as its ability to pass on its inherited traits.  All members of a species are different from one another.  In this activity, you will investigate two variations among peanut plants — length of shell and number of seeds per shell.   Most shells contain a certain number of seeds which is an adaptation to its survival.  

Objective:

Students will investigate natural selection in peanuts.

Materials:

50 peanuts in shells, metric ruler, pencil, graph paper

Procedure:

  1. Count out 50 peanuts in their shells.
  2. Use a metric ruler to measure the length of each shell in millimeters.  Put a check mark in Table 1 in the space indicating the length of the shell.
  3. Open the shell and count the number of seeds inside.  Put a check mark in Table 2 in the space next to the number of seeds that you counted. 
  4. Repeat steps 1 – 3 for the other 49 peanuts.
  5. Set up two bar graphs using the headings from each table as the axes for each graph.
  6. Plot a bar graph from the data in each table.

Data:

Table 1

 

Length of Shell
(mm)
Number of Shells
5-10
10-15
15-20
20-25
25-30
30-35
35-40
40-45
45-50
50-55
55-60
60-65
65-70
70-75

 

 

Table 2

 

Number of Seeds Per Shell Number of Shells
1
2
3

 

 

 

Title: ________________________________________________________

 

Title: ________________________________________________________

 

Questions:

  1. What is the most common length of the shells you measured?
  2. What was the most common number of seeds in the peanut shells that you opened?
  3. What might happen if each shell contained fewer than normal seeds and why?
  4. What might happen if each shell contained more than the normal number of seeds and why?
  5. Was there a relationship between the most common length of shells and the number of seeds they contained? Explain your answer.
  6. Write 1-2 paragraphs explaining how shell length and seed number in peanuts illustrates natural selection within this species.