Identifying Controls and Variables

Identifying Controls and Variables

 

Smithers thinks that a special juice will increase the productivity of workers. He creates two groups of 50 workers each and assigns each group the same task (in this case, they’re supposed to staple a set of papers). Group A is given the special juice to drink while they work. Group B is not given the special juice. After an hour, Smithers counts how many stacks of papers each group has made. Group A made 1,587 stacks, Group B made 2,113 stacks.

 

Identify the:

1. Control Group

2. Independent Variable

3. Dependent Variable

4. What should Smithers’ conclusion be?

 

5. How could this experiment be improved?

Homer notices that his shower is covered in a strange green slime. His friend Barney tells him that coconut juice will get rid of the green slime. Homer decides to check this out by spraying half of the shower with coconut juice. He sprays the other half of the shower with water. After 3 days of “treatment” there is no change in the appearance of the green slime on either side of the shower.

 

6. What was the initial observation?

Identify the-
7. Control Group

8. Independent Variable

9. Dependent Variable

10. What should Homer’s conclusion be?

 

 

 

Bart believes that mice exposed to microwaves will become extra strong (maybe he’s been reading too much Radioactive Man). He decides to perform this experiment by placing 10 mice in a microwave for 10 seconds. He compared these 10 mice to another 10 mice that had not been exposed. His test consisted of a heavy block of wood that blocked the mouse food. he found that 8 out of 10 of the micro waved mice were able to push the block away. 7 out of 10 of the non-micro waved mice were able to do the same. Identify the-
11. Control Group12. Independent Variable

13. Dependent Variable

14. What should Bart’s conclusion be?

15. How could Bart’s experiment be improved?

Krusty was told that a certain itching powder was the newest best thing on the market, it even claims to cause 50% longer lasting itches. Interested in this product, he buys the itching powder and compares it to his usual product. One test subject (A) is sprinkled with the original itching powder, and another test subject (B) was sprinkled with the Experimental itching powder. Subject A reported having itches for 30 minutes. Subject B reported to have itches for 45 minutes. Identify the-
16. Control Group17. Independent Variable

18. Dependent Variable

19. Explain whether the data supports the advertisements claims about its product.

Lisa is working on a science project. Her task is to answer the question: “Does Rogooti (which is a commercial hair product) affect the speed of hair growth”. Her family is willing to volunteer for the experiment.

20. Describe how Lisa would perform this experiment. Identify the control group, and the independent and dependent variables in your description.

 

 

Ink Chromatography

Chromatography of Inks

Introduction:

One of the main jobs of biochemists is to unravel the complexities of chemical compounds and reduce them to their individual components.  The term chromatography comes from two Greek words, “chromat” meaning color and the word “graphon” meaning to write.  Separation of the components of chemical compounds can be done by using several methods. Liquids can be separate by High Performance liquid Chromatography (HPLC), while the components of gases are separated by Gas Chromatography.  Chromatography is a method for analyzing complex mixtures (such as ink) by separating them into the chemicals from which they are made. Chromatography is used to separate and identify all sorts of substances in police work. Drugs from narcotics to aspirin can be identified in urine and blood samples, often with the aid of chromatography.

Chromatography was first used to separate pigments (colors) in leaves, berries, and natural dyes. Paper chromatography is a technique used to separate, isolate, and identify chemical components of a compound. In paper chromatography, the solid surface is the cellulose fibers in the chromatography paper.  A solvent or developer (water, alcohol, or acetone) is placed in the bottom of the chromatography chamber. The paper acts as a wick to pull the solvent up the paper. The solvent front will “wick” up the chromatography paper by capillary action.  A minute drop of the ink or chemical mixture to be separated is placed near the bottom of the strip of chromatography paper, but slightly above the level of the solvent in the chamber.  As the solvent passes over the drop of ink, the components of the ink dissolve in the solvent. Because the components of the ink do not all dissolve at the same rate, as the components of the mixture move upward, they show up as colored streaks.  The separated substances on the chromatography paper form a color pattern called a chromatogram.

To determine the rate of migration for each pigment or component of the ink, the Rf value for each pigment must be calculated. The Rf value represents the ratio of the distance a pigment moved on the chromatogram relative to the  distance the solvent front moved. Each pigment or compound will have a unique Rf value that scientists can use to identify the substance. The Rf value is calculated using the following formula:

Rf = distance traveled by the compound / distance traveled by the solvent

Objective:

Use the process of paper chromatography to separate the pigments in various markers and then determine the Rf value for each color on your chromatogram.

Materials:

Plastic vials, paper clips, markers in assorted colors, chromatography paper, scissors, pencil

Procedure:

  1. Obtain chromatography vials and chromatography strips, and different color markers so that each person in the group will have two chromatograms.
  2. Cut one end of the chromatography strip to a point. The bottom of the point will mark the starting point for movement of the solvent (H2O).
  3. About 2.0 centimeters from the bottom of the strip, draw a faint horizontal line with pencil. This will mark the starting point for measuring the migration distance of each color.
  4. Using a different color marker for each strip, drop a dot of ink on the center of the horizontal pencil line.  Let this dry a moment & then add more ink to the dot.
  5. Add a small amount of water to the bottom of the chromatography chamber. (The ink dot should be ABOVE the surface of the water.)
  6. Straighten a paper clip and poke a hole through the top of your chromatography strip
  7. Use the paper clip to hang the strip in your chamber. (The straighten paper clip will lay across the top of the chamber.)
  8. MAKE SURE THE TIP OF THE STRIP BUT NOT THE INK IS IMMERSED IN THE WATER!
  9. Notice the separation of the ink as both the solvent and ink travel up the chromatography strip.
  10. Once the solvent front has neared the top of the strip, remove the strip from the chamber and lay it on a piece of paper towel.
  11. Immediately mark the solvent front with a faint pencil line.
  12. Immediately mark the leading edge of each color with an “x”.
  13. Measure, in millimeters, the distance the solvent migrated from the tip of the strip to your solvent front pencil line.
  14. Measure, in millimeters, the distance each color migrated from the point of origin (pencil line where the ink dot was placed) to the leading edge of the color (marked with an “x”.
  15. Record all data in Data table 1.
  16. Calculate and record the Rf value for each color using the formula below.

Rf = distance traveled by the compound / distance traveled by the solvent

Data Table 1

 

Color pen/marker used:

Separated colors
(list top of strip to bottom)
Distance each color traveled

(mm)

Distance solvent (H2O)
(mm)
Rf Value for each color

(Distance color traveled / Distance solvent traveled)

       
       
       
       
       
       
       
       

 

 

 

Color pen/marker used:

Separated colors
(list top of strip to bottom)
Distance each color traveled

(mm)

Distance solvent (H2O)
(mm)
Rf Value for each color

(Distance color traveled / Distance solvent traveled)

       
       
       
       
       
       
       
       

 

 

Questions:

1. Which color of marker did you use?

2. which color separated out first from your ink dot?

3. Why did the inks separate?

 

4. What was your solvent?

5. If you had used markers that weren’t water-soluble, how would you have had to change this lab?

 

6. Why did some inks move a greater distance than others?

 

7. How do scientists use paper chromatography in their investigations?

 

 

Gastric Bacteria

 

The Nobel Prize in Physiology or Medicine for 2005

jointly to

Barry J. Marshall and J. Robin Warren

for their discovery of

“the bacterium Helicobacter pylori and its role in gastritis and peptic ulcer disease”

 

 Introduction

This year’s Nobel Laureates in Physiology or Medicine made the remarkable and unexpected discovery that inflammation in the stomach (gastritis) as well as ulceration of the stomach or duodenum (peptic ulcer disease) is the result of an infection of the stomach caused by the bacterium Helicobacter pylori.

Robin Warren (born 1937), a pathologist from Perth, Australia, observed small curved bacteria colonizing the lower part of the stomach (antrum) in about 50% of patients from which biopsies had been taken. He made the crucial observation that signs of inflammation were always present in the gastric mucosa close to where the bacteria were seen.

Barry Marshall (born 1951), a young clinical fellow, became interested in Warren’s findings and together they initiated a study of biopsies from 100 patients. After several attempts, Marshall succeeded in cultivating a hitherto unknown bacterial species (later denoted Helicobacter pylori) from several of these biopsies. Together they found that the organism was present in almost all patients with gastric inflammation, duodenal ulcer or gastric ulcer. Based on these results, they proposed that Helicobacter pylori is involved in the aetiology of these diseases.

Even though peptic ulcers could be healed by inhibiting gastric acid production, they frequently relapsed, since bacteria and chronic inflammation of the stomach remained. In treatment studies, Marshall and Warren as well as others showed that patients could be cured from their peptic ulcer disease only when the bacteria were eradicated from the stomach. Thanks to the pioneering discovery by Marshall and Warren, peptic ulcer disease is no longer a chronic, frequently disabling condition, but a disease that can be cured by a short regimen of antibiotics and acid secretion inhibitors.

Peptic ulcer – an infectious disease!

This year’s Nobel Prize in Physiology or Medicine goes to Barry Marshall and Robin Warren, who with tenacity and a prepared mind challenged prevailing dogmas. By using technologies generally available (fibre endoscopy, silver staining of histological sections and culture techniques for microaerophilic bacteria), they made an irrefutable case that the bacterium Helicobacter pylori is causing disease. By culturing the bacteria they made them amenable to scientific study.

In 1982, when this bacterium was discovered by Marshall and Warren, stress and lifestyle were considered the major causes of peptic ulcer disease. It is now firmly established that Helicobacter pylori causes more than 90% of duodenal ulcers and up to 80% of gastric ulcers. The link between Helicobacter pylori infection and subsequent gastritis and peptic ulcer disease has been established through studies of human volunteers, antibiotic treatment studies and epidemiological studies.

Helicobacter pylori causes life-long infection

Helicobacter pylori is a spiral-shaped Gram-negative bacterium that colonizes the stomach in about 50% of all humans. In countries with high socio-economic standards infection is considerably less common than in developing countries where virtually everyone may be infected.

Infection is typically contracted in early childhood, frequently by transmission from mother to child, and the bacteria may remain in the stomach for the rest of the person’s life. This chronic infection is initiated in the lower part of the stomach (antrum). As first reported by Robin Warren, the presence of Helicobacter pylori is always associated with an inflammation of the underlying gastric mucosa as evidenced by an infiltration of inflammatory cells.

The infection is usually asymptomatic but can cause peptic ulcer!

The severity of this inflammation and its location in the stomach is of crucial importance for the diseases that can result from Helicobacter pylori infection. In most individuals Helicobacter pylori infection is asymptomatic. However, about 10-15% of infected individuals will some time experience peptic ulcer disease. Such ulcers are more common in the duodenum than in the stomach itself. Severe complications include bleeding and perforation.

The current view is that the chronic inflammation in the distal part of the stomach caused by Helicobacter pylori infection results in an increased acid production from the non-infected upper corpus region of the stomach. This will predispose for ulcer development in the more vulnerable duodenum.

Malignancies associated with Helicobacter pylori infection

In some individuals Helicobacter pylori also infects the corpus region of the stomach. This results in a more widespread inflammation that predisposes not only to ulcer in the corpus region, but also to stomach cancer. This cancer has decreased in incidence in many countries during the last half-century but still ranks as number two in the world in terms of cancer deaths.

Inflammation in the stomach mucosa is also a risk factor for a special type of lymphatic neoplasm in the stomach, MALT (mucosa associated lymphoid tissue) lymphoma. Since such lymphomas may regress when Helicobacter pylori is eradicated by antibiotics, the bacterium plays an important role in perpetuating this tumour.

 Disease or not – interaction between the bacterium and the human host

Helicobacter pylori is present only in humans and has adapted to the stomach environment. Only a minority of infected individuals develop stomach disease. After Marshall’s and Warren’s discovery, research has been intense. Details underlying the exact pathogenetic mechanisms are continuously being unravelled.

The bacterium itself is extremely variable, and strains differ markedly in many aspects, such as adherence to the gastric mucosa and ability to provoke inflammation. Even in a single infected individual all bacteria are not identical, and during the course of chronic infection bacteria adapt to the changing conditions in the stomach with time.

Likewise, genetic variations among humans may affect their susceptibility to Helicobacter pylori. Not until recently has an animal model been established, the Mongolian gerbil. In this animal, studies of peptic ulcer disease and malignant transformation promise to give more detailed information on disease mechanisms.

Antibiotics cure but can lead to resistance

Helicobacter pylori infection can be diagnosed by antibody tests, by identifying the organism in biopsies taken during endoscopy, or by the non-invasive breath test that identifies bacterial production of an enzyme in the stomach.

An indiscriminate use of antibiotics to eradicate Helicobacter pylori also from healthy carriers would lead to severe problems with bacterial resistance against these important drugs. Therefore, treatment against Helicobacter pylori should be used restrictively in patients without documented gastric or duodenal ulcer disease.

Microbial origin of other chronic inflammatory conditions?

Many diseases in humans such as Crohn’s disease, ulcerative colitis, rheumatoid arthritis and atherosclerosis are due to chronic inflammation. The discovery that one of the most common diseases of mankind, peptic ulcer disease, has a microbial cause, has stimulated the search for microbes as possible causes of other chronic inflammatory conditions.

Even though no definite answers are at hand, recent data clearly suggest that a dysfunction in the recognition of microbial products by the human immune system can result in disease development. The discovery of Helicobacter pylori has led to an increased understanding of the connection between chronic infection, inflammation and cancer.

Source: http://nobelprize.org/nobel_prizes/medicine/laureates/2005/press.html

 

Graphing Practice

Graphing Practice

Introduction

  • Graphing is an important procedure used by scientists to display the data that is collected during a controlled experiment
  • Line graphs must be constructed correctly to accurately portray the data collected
  • Many times the wrong construction of a graph detracts from the acceptance of an individual’s hypothesis
  • A graph contains five major parts:
    a. Title
    b. The independent variable
    c. The dependent variable
    d. The scales for each variable
    e. A legend
  • The title: depicts what the graph is about. By reading the title, the reader should get an idea about the graph. It should be a concise statement placed above the graph.
  • The Independent Variable: is the variable that can be controlled by the experimenter. It usually includes time (dates, minutes, hours), depth (feet, meters), temperature (Celsius). This variable is placed on the X axis (horizontal axis).
  • The Dependent Variable: is the variable that is directly affected by the independent variable. It is the result of what happens because of the independent variable. Example: How many oxygen bubbles are produced by a plant located five meters below the surface of the water? The oxygen bubbles are dependent on the depth of the water. This variable is placed on the Y-axis or vertical axis.
  • The Scales for each Variable: In constructing a graph one needs to know where to plot the points representing the data. In order to do this a scale must be employed to include all the data points. This must also take up a conservative amount of space. It is not suggested to have a run on scale making the graph too hard to manage. The scales should start with 0 and climb based on intervals such as: multiples of 2, 5, 10, 20, 25, 50, or 100. The scale of numbers will be dictated by your data values.
  • The Legend: is a short descriptive narrative concerning the graph’s data. It should be short and concise and placed under the graph.
  • The Mean for a group of variables: To determine the mean for a group of variables, divide the sum of the variables by the total number of variables to get an average.
  • The median for a group of variables: To determine median or “middle” for an even number of values, put the values in ascending order and take the average of the two middle values.    e.g.    2, 3, 4, 5, 9, 10     Add 4+5 (2 middle values) and divide by 2 to get 4.5
  • The mode for a group of variables: The mode for a group of values is the number that occurs most frequently.     e.g.   2, 5,  8, 2,  6,  11    The number 2 is the mode because it occurred most often (twice)  

Procedure 1:
Using the following data, answer the questions below and then construct a line graph.

 

Depth in meters Number of Bubbles / minute Plant A Number of Bubbles / minute Plant B
2 29 21
5 36 27
10 45 40
16 32 50
25 20 34
30 10 20

 

 

1. What is the dependent variable and why?  

2. What is the independent variable and why?

3. What title would you give the graph? .

4. What are the mean, median, and mode of all 3 columns of data? 

a). Depth :                      Mean____________Median__________Mode________ 

b). Bubble Plant A.:        Mean ____________Median_________Mode________ 

c). Bubbles Plant B:        Mean ____________Median_________Mode________

Graph Title: _________________________________________________________

Legend: ______________________________________________________________ 

Procedure 2:
Diabetes is a disease affecting the insulin producing glands of the pancreas. If there is not enough insulin being produced by these cells, the amount of glucose in the blood will remain high. A blood glucose level above 140 for an extended period of time is not considered normal. This disease, if not brought under control, can lead to severe complications and even death. 

Answer the following questions concerning the data below and then graph it.  

 

Time After Eating hours Glucose mg /dL of Blood Person A Glucose mg /dL of Blood Person B
0.5 170 180
1 155 195
1.5 140 230
2 135 245
2.5 140 235
3 135 225
4 130 200

 

 1. What is the dependent variable and why?

2. What is the independent variable and why?

3. What title would you give the graph?

4. Which, if any, of the above individuals (A or B) has diabetes? 

5. What data do you have to support your hypothesis? 

6. If the time period were extended to 6 hours, what would the expected blood glucose level for Person B? 

Title: ________________________________________________________________

Legend: ______________________________________________________________

Summary:
1. What conclusions can be determined from the data in graph 1?

2. What conclusions can be determined from the data in graph 2?

3. Can the data in each of these graphs be used to construct other types of graphs?

4. If so, what other graph types can be constructed?

 

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Gene Expression

 

Gene Expression [18,787 bytes]

 

 

Section 11-1     Control of Gene Expression

 

1. Cells use ______________________ to build hundreds of different________________each with a unique ____________________________.

2. Are all proteins used by a cell at any one time? If not, how do cells control this?

3. Define gene expression.

4. When are proteins produced?

5. What is the genome?

6. What are the 2 steps of gene expression?

7. What 2 scientists determined how genes are expressed in prokaryotes?

8. What gene & in what organism did Jacob & Monod make their discoveries about gene expression?

9. Name the 3 regulatory elements on the DNA of the E. coli bacterium and tell the function of each.

10. What is an operon & what 3 things is it made up of?

11. What name did Jacob & Monod give their gene & why?

12. If lactose is not present, what attaches to the operator?

13. Define repressor protein and give its function.

14. Define repression.

15. What occurs if lactose is present in the E. coli in lactose metabolism?

16. What is an inducer?

17. What is an inducer for E. coli in lactose metabolism?

18. How does the genome of eukaryotes compare with that of prokaryotes?

19. Are operons found in eukaryotes?

20. Each eukaryotic cell contains a ___________________ set of genes, but only some genes

are ______________________ at a given time.

21. What controls much of the gene expression in eukaryotes?

22. What is euchromatin?

23. Some sections of chromatin always remain coiled preventing what process?

24. Name & define the 2 kinds of segments found behind the promoter in eukaryotes.

25. Where do the processes of transcription & translation take place in prokaryotes?

26. Where do these processes take place in eukaryotes?

27. Are introns and/or exons transcribed?

28. What is pre-mRNA and how is mRNA formed from this?

 

Section 11-2     Gene Expression and Development

 

29. Multicellular, sexually reproducing organisms begin life as a _____________________with all cells containing the same _______________________.

30. Genes may be turned ______________ and _____________as various ___________________ are needed by the cells.

31. What is cell differentiation?

32. Define morphogenesis.

33. What genes determine what anatomical structures an organism will develop during morphogenesis?

34. What is a tumor and what are the 2 main types?

35. Define benign tumor.

36. Are benign tumors dangerous? Explain.

37. What treatment do doctors use with benign tumors?

38. Define malignant tumor.

39. Malignant tumors are commonly known as ____________________________.

40. What is metastasis & what happens to the body when this occurs?

41. How are malignant tumors categorized?

42. Name & describe 4 types of malignant tumors.

43. Lung cancer & breast cancer are what type of tumors?

44. When do normal cells stop dividing? Do cancer cells respond the same way? Explain.

45. What trait of cancer cells facilitates the spread of cancer cells in the body?

46. What is a carcinogen & give 5 examples?

47. What causes most lung cancer?

48. What is the effect of mutagens on cells?

49. What are oncogenes?

50. Certain ____________________ can cause cancer in plants & animals.

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